iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099268

Ensembl Protein ID

POPTR_0013s01360.1

UniProt Accession

B9I7A5; B9I7A5_POPTR

Genbank Protein ID

EEE95421.2

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000349

Gene Name

POPTRDRAFT_773603; POPTR_0013s01360g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0013s01360	POPTR_0013s01360.1	POPTR_0013s01360.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-24	84.2	451	484
UBD/Beta-Prp	1.30e-43	150.4	404	656

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlr 31
           H ++v++laf  ++  l +v+++dD+ ikvWDl+
   Q: 451  HVGGVNDLAFahPNkQLcVVTCGDDKLIKVWDLT 484
           999********9774344799***********86 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrsl...sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlk 91
           k++ +sv + v++spd++++ +++  + i ++ +  ++ lr+      h ++v+++ f +  k    vt+++D++ikvwdl  +k +  ++
   Q: 404  KDASISVTR-VAWSPDGNFVGAAFNKHLIHLYAYNGPNDLRQHleiDAHVGGVNDLAFAHPNKqlCVVTCGDDKLIKVWDLTGRKLF-NFE 492
           233333333.55566666666666666666666555554332112255666666666666555566666666666666666555443.566 PP
   S: 92   ghedsvlslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtlt 176
           ghe+ v+ +  +   + +++ s+  d  i+ w  ++     + +++  ++ +++ ++ dg+ l+s+++    D+ +  W+ + g++ r + 
   Q: 493  GHEAAVYNICPHHkeNIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTskegDSYLVEWNESEGSVKRSFL 582
           66666666555544444666666666666666666655555344433.366666666666666666542333445555555********** PP
   S: 177  gghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiri 248
           g  ++s   ++fd ++++++++++dg++k+wd+++ + + t  +    ++  +++f +++++l+++++D+  +i
   Q: 583  GFRKKSAGVVQFDTTQNHFLAAGDDGQIKFWDMENISFITTTDADGglQTLPRLKFNKEGNLLAVTTADNGFKI 656
           *9********************************9999999887664477778999999******999998887 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKESVHKLEK ESGFYFNMKY FEEKVLAGEW DEVEKYLVGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRQDK AKAVEILVGD LKVFLTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTTTTTAT CTCCTCCTCT CTCTCTTTCT CTCTCAAACC GCAGCCTTGA AACCCTAGAA 60
GTTGTCTCGA TTTCCGAGCT CTAAGAGCCT TAATTGAGCT CTGAAGTCCC TGAATTCAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG

pop:POPTR_0013s01360g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000072	Aegilops tauschii	66.91	0.00e+00	1436.00
IUUC-Aly-005503	Arabidopsis lyrata	72.50	0.00e+00	1650.00
IUUC-Ath-007641	Arabidopsis thaliana	75.61	0.00e+00	1729.00
IUUC-Bdi-014677	Brachypodium distachyon	71.89	0.00e+00	1626.00
IUUC-Gma-042940	Glycine max	82.07	0.00e+00	1905.00
IUUC-Mtr-058168	Medicago truncatula	82.49	0.00e+00	1914.00
IUUC-Tca-121768	Theobroma cacao	85.25	0.00e+00	1942.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence