iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-002936

Ensembl Protein ID

ERM98648

UniProt Accession

W1NSH7; W1NSH7_AMBTC

Genbank Protein ID

ERM98648.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

KI395307

Gene Name

AMTR_s00109p00103350

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00109p00103350	ERM98648	ERM98648

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-09	37.2	1216	1248
E3 activity/RING/U-box	2.00e-25	89.1	405	475

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           H+  +t+la    sd++  sGs D+++kvW + t
   Q: 1216 HSKAITSLAIlhaSDNM-YSGSLDKSVKVWAIGT 1248
           9999*****88987666.************8765 PP

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawcee 71
            p++f+CpI+ +++ dPv+l++G+ty+r++I++wl++g++tcP+trq+l++  l + n++l+rli +w+e+
   Q: 405  APKDFVCPITTQIFIDPVTLETGQTYERKAIQEWLDRGNNTCPITRQKLSSIVLpKTNYVLKRLIASWIEQ 475
           699*************************************************999*************986 PP

Organism

Amborella trichopoda

Protein Sequence
(Fasta)

MDPGSMAALF FDKATAFAES LASSSDRADL RTHLARVLES PNHGSALQAL DVAIQALDPP 60
HCNSPSSLKK AQKTLKALAQ NAPFPSISAF SSLYLSFLSI SENNPLQAAI NVATVFAKDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCAG GCTCCATGGC CGCACTCTTC TTCGACAAAG CCACGGCCTT TGCCGAGTCC 60
CTGGCCTCGA GCTCCGACCG AGCCGACCTT CGAACCCACT TAGCCCGGGT GCTTGAGTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	48.08	0.00e+00	758.00
IUUC-Bdi-014680	Brachypodium distachyon	47.40	0.00e+00	884.00
IUUC-Gma-044085	Glycine max	48.83	0.00e+00	970.00
IUUC-Lpe-051224	Leersia perrieri	46.63	0.00e+00	643.00
IUUC-Mtr-058452	Medicago truncatula	40.19	0.00e+00	889.00
IUUC-Mac-064685	Musa acuminata	43.70	0.00e+00	995.00
IUUC-Obr-076347	Oryza brachyantha	48.38	0.00e+00	745.00
IUUC-Ogl-077695	Oryza glaberrima	48.99	0.00e+00	644.00
IUUC-Ogu-078873	Oryza glumaepatula	48.82	0.00e+00	671.00
IUUC-Oin-079745	Oryza indica	53.70	4.00e-136	478.00
IUUC-Olo-081050	Oryza longistaminata	50.09	7.00e-128	450.00
IUUC-Ome-081604	Oryza meridionalis	47.97	0.00e+00	659.00
IUUC-Oni-082155	Oryza nivara	47.92	0.00e+00	637.00
IUUC-Opu-083775	Oryza punctata	50.61	4.00e-106	378.00
IUUC-Oru-084628	Oryza rufipogon	46.04	0.00e+00	630.00
IUUC-Pop-099630	Populus trichocarpa	36.23	0.00e+00	818.00
IUUC-Ppe-101249	Prunus persica	64.49	0.00e+00	788.00
IUUC-Smo-109545	Selaginella moellendorffii	33.26	2.00e-122	433.00
IUUC-Sit-110152	Setaria italica	48.32	0.00e+00	785.00
IUUC-Sly-111919	Solanum lycopersicum	50.34	0.00e+00	854.00
IUUC-Stu-111946	Solanum tuberosum	52.12	0.00e+00	887.00
IUUC-Sbi-114464	Sorghum bicolor	47.70	0.00e+00	770.00
IUUC-Tca-121369	Theobroma cacao	51.98	0.00e+00	1083.00
IUUC-Tae-123295	Triticum aestivum	48.99	0.00e+00	771.00
IUUC-Tur-126163	Triticum urartu	46.80	0.00e+00	688.00
IUUC-Vvi-131144	Vitis vinifera	55.48	0.00e+00	1099.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence