iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099942

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000343

Gene Name

POPTR_0007s04220g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s04220	POPTR_0007s04220.1	POPTR_0007s04220.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.80e-30	104.5	8	76

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           vp++f+CpIsl+l +dPv+l++G+tydrssIekwla g+ tcPvt+q+l++ ++vPn+tlr+li++w++
   Q: 8    VPHFFMCPISLDLIKDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLQDPSMVPNNTLRHLIDQWLQ 76
           89*****************************************************************86 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKEAEMTVPH FFMCPISLDL IKDPVTLCTG QTYDRSSIEK WLAAGNLTCP VTMQKLQDPS 60
MVPNNTLRHL IDQWLQIGPQ FDPVYLSTID SLASLKKILE SGDASLEYKC QTLQNIQALT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTAAATCTCA GCTGCTGCTG AAGCTGCTGG CACTGTGGAC TAGAGGTGGT AGCTTGTTTT 60
CTCTCATCTT GCCCATCATT TATGTTCTTC TTCCTTTGTG TTTCTCTTGT GCCATTGGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0007s04220g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002561	Amborella trichopoda	45.48	8.00e-68	250.00
IUUC-Bdi-014442	Brachypodium distachyon	42.08	3.00e-37	149.00
IUUC-Gma-043080	Glycine max	58.50	5.00e-112	397.00
IUUC-Hvu-047498	Hordeum vulgare	55.41	5.00e-18	84.70
IUUC-Lpe-051453	Leersia perrieri	40.26	6.00e-31	127.00
IUUC-Mtr-058668	Medicago truncatula	58.25	7.00e-116	409.00
IUUC-Mac-064799	Musa acuminata	46.03	3.00e-64	238.00
IUUC-Ogl-077204	Oryza glaberrima	70.42	1.00e-27	117.00
IUUC-Ogu-078726	Oryza glumaepatula	70.42	2.00e-27	116.00
IUUC-Ome-081303	Oryza meridionalis	39.73	1.00e-30	126.00
IUUC-Oni-082692	Oryza nivara	35.60	6.00e-29	121.00
IUUC-Opu-083613	Oryza punctata	40.48	4.00e-38	151.00
IUUC-Oru-084341	Oryza rufipogon	35.60	4.00e-29	121.00
IUUC-Osa-086241	Oryza sativa	35.17	1.00e-29	123.00
IUUC-Ppe-101486	Prunus persica	60.10	2.00e-115	408.00
IUUC-Sit-110225	Setaria italica	38.71	9.00e-36	144.00
IUUC-Sly-111154	Solanum lycopersicum	51.73	7.00e-93	333.00
IUUC-Stu-112583	Solanum tuberosum	51.98	1.00e-94	339.00
IUUC-Sbi-114119	Sorghum bicolor	42.29	8.00e-45	173.00
IUUC-Ssc-116236	Sus scrofa	37.70	6.00e-07	48.10
IUUC-Tae-122999	Triticum aestivum	42.21	1.00e-41	163.00
IUUC-Tur-126273	Triticum urartu	60.29	3.00e-19	88.60
IUUC-Vvi-131284	Vitis vinifera	63.16	6.00e-129	453.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence