iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G54390	AT1G54390.2	AT1G54390.2
AT1G54390	AT1G54390.4	AT1G54390.4
AT1G54390	AT1G54390.1	AT1G54390.1
AT1G54390	AT1G54390.7	AT1G54390.7

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.90e-09	37.1	207	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCek..Cr..ewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++ + ++  ++ C++  C+  ewfH++C++l+  e++ +  kw+Cp Cr
   Q: 207  TYC-VCHQVSFGD--MIACDNenCQggEWFHYTCVGLT-PETRFKG-KWYCPTCR 256
           69*.********9..*****999*999***********.4444444.4******8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Protein Sequence
(Fasta)

MAIARTGVYV DDYLEYASTF PAELQRLLNT VRELDERSQS LINQTRQQTK YCLGLASQSS 60
KKGNGNHYNN GGLDEEETIE KMRKEIESSQ ENALSLCTEK VLLARQAYDL IDSHVKRLDE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTGCGTA ATCTCAATGT TTGTGGGGCT TTTAGTTTTT AGCCCATGTA TGGTTTGATA 60
ACTTTAGTAA CTCGTGAGAA AAAAAAAAGC TTCGTTCTCA ATCCCAATTC GAAATCCTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0341--Growth regulation
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028652--ING2_plant-typ
IPR028651--ING_fam
IPR024610--ING_N_histone_binding
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50016--ZF_PHD_2

Pfam

PF12998--ING

SMART

SM01408--ING
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0035064--F:methylated histone binding
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
GO:0040008--P:regulation of growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT1G54390

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002435	Amborella trichopoda	73.36	3.00e-99	353.00
IUUC-Ame-011133	Astyanax mexicanus	33.33	3.00e-34	137.00
IUUC-Bdi-014508	Brachypodium distachyon	65.25	1.00e-96	345.00
IUUC-Bol-015751	Brassica oleracea	91.22	1.00e-131	461.00
IUUC-Bra-017962	Brassica rapa	93.54	9.00e-132	461.00
IUUC-Csv-026288	Ciona savignyi	29.23	2.00e-28	118.00
IUUC-Dse-031323	Dothistroma septosporum	59.32	7.00e-17	82.00
IUUC-Gmo-038982	Gadus morhua	35.14	3.00e-37	147.00
IUUC-Gac-042184	Gasterosteus aculeatus	35.16	4.00e-36	144.00
IUUC-Gma-044224	Glycine max	79.25	2.00e-110	390.00
IUUC-Hvu-047275	Hordeum vulgare	62.88	7.00e-94	335.00
IUUC-Lpe-051512	Leersia perrieri	63.85	1.00e-94	338.00
IUUC-Loc-052725	Lepisosteus oculatus	34.25	1.00e-30	125.00
IUUC-Lma-053234	Leptosphaeria maculans	55.17	8.00e-15	75.50
IUUC-Mtr-058288	Medicago truncatula	79.09	2.00e-113	401.00
IUUC-Mac-065671	Musa acuminata	70.66	2.00e-104	370.00
IUUC-Ont-072446	Oreochromis niloticus	33.72	8.00e-36	142.00
IUUC-Obr-076822	Oryza brachyantha	65.77	1.00e-98	351.00
IUUC-Ogl-077432	Oryza glaberrima	65.00	6.00e-98	349.00
IUUC-Osa-085802	Oryza sativa	65.00	6.00e-98	349.00
IUUC-Ola-086429	Oryzias latipes	34.50	1.00e-31	129.00
IUUC-Ppa-096009	Physcomitrella patens	59.48	7.00e-81	292.00
IUUC-Pfo-096617	Poecilia formosa	34.50	3.00e-36	144.00
IUUC-Pop-099544	Populus trichocarpa	78.36	4.00e-105	373.00
IUUC-Pca-100475	Procavia capensis	27.52	2.00e-23	101.00
IUUC-Ppe-101698	Prunus persica	82.26	1.00e-100	358.00
IUUC-Smo-108678	Selaginella moellendorffii	61.15	1.00e-83	301.00
IUUC-Sit-110189	Setaria italica	66.15	1.00e-89	322.00
IUUC-Sly-111209	Solanum lycopersicum	76.52	2.00e-101	360.00
IUUC-Stu-112762	Solanum tuberosum	76.52	2.00e-101	361.00
IUUC-Sbi-114379	Sorghum bicolor	64.62	5.00e-97	346.00
IUUC-Tru-118253	Takifugu rubripes	33.85	2.00e-35	141.00
IUUC-Tca-121271	Theobroma cacao	82.95	5.00e-109	385.00
IUUC-Tre-121950	Trichoderma reesei	59.68	5.00e-19	89.40
IUUC-Tae-122798	Triticum aestivum	62.88	2.00e-94	337.00
IUUC-Vvi-131583	Vitis vinifera	80.68	9.00e-117	411.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence