iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006179

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

GL348719

Gene Name

ARALYDRAFT_913438

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_701180.1	scaffold_701180.1	scaffold_701180.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.40e-07	30.7	139	181

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  +d +++lp C H+fh dC+  w         + +CPlCr
   Q: 139  CAVCLCEFetEDKLRLLPkCSHAFHMDCIDTW------LLSHSTCPLCR 181
           ********77555999****************......89999*****8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MKFSRENMKW VFPEIKTSQN FLSPSSLPRP PPQEPPLSLR SNNANFDLNS KISPSILLII 60
IILSIIFFIS GLLHLLVRFL LTPSSRDRED YFDNVTALQG QLQQLFHLHD SGVDQSFIDT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCTTTTCT CTCTCACACT TATGAAATTT TCTCGGGAAA ATATGAAATG GGTTTTTCCA 60
GAAATCAAAA CAAGTCAGAA TTTCCTCTCT CCTTCATCAC TTCCACGACC ACCACCACAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding
GO:0080167--P:response to karrikin

KEGG

aly:ARALYDRAFT_913438

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002500	Amborella trichopoda	42.58	3.00e-68	251.00
IUUC-Ath-006858	Arabidopsis thaliana	92.13	0.00e+00	709.00
IUUC-Ago-007872	Ashbya gossypii	37.93	4.00e-11	59.70
IUUC-Bol-016067	Brassica oleracea	81.24	1.00e-175	608.00
IUUC-Bra-016948	Brassica rapa	83.33	9.00e-162	562.00
IUUC-Gma-043592	Glycine max	48.48	4.00e-81	294.00
IUUC-Lpe-051680	Leersia perrieri	39.71	2.00e-51	196.00
IUUC-Lma-052952	Leptosphaeria maculans	59.09	2.00e-11	63.50
IUUC-Mtr-058782	Medicago truncatula	46.87	1.00e-80	293.00
IUUC-Mac-064703	Musa acuminata	40.92	1.00e-55	209.00
IUUC-Ppa-095806	Physcomitrella patens	75.29	9.00e-35	140.00
IUUC-Pop-099449	Populus trichocarpa	54.57	4.00e-95	341.00
IUUC-Ppe-101557	Prunus persica	51.03	1.00e-84	306.00
IUUC-Pte-104131	Pyrenophora teres	54.55	1.00e-10	61.20
IUUC-Sit-109852	Setaria italica	39.39	2.00e-54	206.00
IUUC-Sly-111133	Solanum lycopersicum	47.14	1.00e-84	306.00
IUUC-Sbi-114435	Sorghum bicolor	40.28	5.00e-56	211.00
IUUC-Tca-121042	Theobroma cacao	51.98	1.00e-82	299.00
IUUC-Vvi-130906	Vitis vinifera	50.66	2.00e-83	302.00
IUUC-Zma-135271	Zea mays	40.38	3.00e-53	201.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence