iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099796

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

F-box family protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_821432; POPTR_0009s06140g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s06140	POPTR_0009s06140.1	POPTR_0009s06140.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-13	49.0	247	273

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclafsd.tllvsGsdDgtikv 27
           Ht++vtcl++s+  l++sGs  g i +
   Q: 247  HTEPVTCLSLSEdQLIISGSSLGRIAI 273
           9*********5559******9998876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGPPPGSKRS PPKKRSSTTP TSIRSLEHDA LCIIFSYLGL FDVVRSSAVC KFWNEIIKRS 60
KLLQLLYLKQ QRRSSRSDFS EESLNVYLEE LAIEHQRQSL VQGSLHIDQW KGHSLGVDQC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACGGAGTTT CTGCCATTAA AACTACAGGT CGTTTGAAAT AGGATCTCCT CGTGTTTTCT 60
TCTGAAAGAC TGTCGTTAGA ATTAGTTAGT GGTGACTTGT AAATCTCTCT CCACCTCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001810--F-box_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50181--FBOX
PS50294--WD_REPEATS_REGION

Pfam

PF00646--F-box

SMART

SM00256--FBOX
SM00320--WD40

KEGG

pop:POPTR_0009s06140g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003151	Amborella trichopoda	51.78	6.00e-106	377.00
IUUC-Aly-005690	Arabidopsis lyrata	56.14	2.00e-137	481.00
IUUC-Ath-006699	Arabidopsis thaliana	56.19	9.00e-135	473.00
IUUC-Bdi-014108	Brachypodium distachyon	45.41	3.00e-103	367.00
IUUC-Bol-015377	Brassica oleracea	55.10	2.00e-137	481.00
IUUC-Bra-016934	Brassica rapa	59.59	7.00e-120	423.00
IUUC-Gma-043394	Glycine max	57.95	7.00e-142	496.00
IUUC-Lpe-051613	Leersia perrieri	42.72	6.00e-92	330.00
IUUC-Mtr-057690	Medicago truncatula	56.18	7.00e-141	493.00
IUUC-Mac-064938	Musa acuminata	57.81	2.00e-105	374.00
IUUC-Oba-075418	Oryza barthii	47.53	2.00e-100	358.00
IUUC-Obr-076882	Oryza brachyantha	45.84	1.00e-102	366.00
IUUC-Ogl-077438	Oryza glaberrima	45.69	6.00e-106	377.00
IUUC-Ogu-078943	Oryza glumaepatula	45.69	7.00e-106	376.00
IUUC-Oin-079069	Oryza indica	45.45	2.00e-105	375.00
IUUC-Olo-080409	Oryza longistaminata	42.46	2.00e-90	325.00
IUUC-Oni-083056	Oryza nivara	44.98	7.00e-104	370.00
IUUC-Opu-084172	Oryza punctata	45.78	7.00e-104	370.00
IUUC-Oru-085030	Oryza rufipogon	45.22	9.00e-105	373.00
IUUC-Osa-085520	Oryza sativa	45.22	9.00e-105	373.00
IUUC-Ppa-095450	Physcomitrella patens	29.79	5.00e-43	167.00
IUUC-Ppe-101252	Prunus persica	62.56	6.00e-142	496.00
IUUC-Smo-109369	Selaginella moellendorffii	28.69	1.00e-31	130.00
IUUC-Sit-109830	Setaria italica	45.80	5.00e-101	360.00
IUUC-Sly-111786	Solanum lycopersicum	54.98	5.00e-117	413.00
IUUC-Sbi-114102	Sorghum bicolor	47.48	9.00e-106	376.00
IUUC-Tca-121562	Theobroma cacao	62.88	4.00e-139	487.00
IUUC-Tae-122920	Triticum aestivum	46.01	2.00e-104	372.00
IUUC-Tur-126707	Triticum urartu	39.07	4.00e-79	288.00
IUUC-Vvi-131441	Vitis vinifera	65.62	3.00e-152	531.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence