iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099290

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_672873; POPTR_0012s08030g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s08030	POPTR_0012s08030.1	POPTR_0012s08030.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.90e-32	112.2	278	347

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           e+f+CpIslelM+dPv++++G+tydrssIe+wl+ g+ tcP+t+++lt+++lvPn+tlr+liq++c+e +
   Q: 278  EDFRCPISLELMTDPVTVSTGQTYDRSSIERWLKAGNMTCPKTGERLTSTELVPNTTLRKLIQQFCAEVG 347
           68****************************************************************9875 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MILKFDQTDR RILTFPAVHP CEGISPATLL SSLIDLSQNI CNYQSKLFAT QRKNARETIR 60
QIGLLLLFFE EIRDRGLVLS DSALLCFSEL HHAFQKVQFL LEDCTREGAR LWILMKCQLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGAAAATCA CACTACACCC GAAGCGAAAC AGAACAGAAC AAAACCAGAG TAAAGACAGA 60
GAGGGTCCTC TGTTTTTCAC TTGAAATGAT TCTAAAGTTT GACCAAACTG ATCGCCGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0012s08030g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000617	Aegilops tauschii	37.74	2.00e-92	332.00
IUUC-Atr-002640	Amborella trichopoda	39.49	7.00e-121	427.00
IUUC-Aly-006337	Arabidopsis lyrata	41.56	2.00e-148	519.00
IUUC-Ath-007598	Arabidopsis thaliana	40.82	1.00e-143	503.00
IUUC-Bdi-014095	Brachypodium distachyon	38.24	2.00e-112	399.00
IUUC-Bol-015964	Brassica oleracea	41.73	7.00e-140	490.00
IUUC-Bra-017789	Brassica rapa	42.23	4.00e-136	478.00
IUUC-Gma-043679	Glycine max	58.60	0.00e+00	797.00
IUUC-Hvu-047204	Hordeum vulgare	37.99	4.00e-129	454.00
IUUC-Lpe-051010	Leersia perrieri	39.05	2.00e-92	332.00
IUUC-Mtr-058794	Medicago truncatula	59.61	0.00e+00	790.00
IUUC-Mac-064527	Musa acuminata	46.56	1.00e-82	300.00
IUUC-Ogl-077133	Oryza glaberrima	39.45	1.00e-93	337.00
IUUC-Ogu-078633	Oryza glumaepatula	39.35	3.00e-94	338.00
IUUC-Oin-079248	Oryza indica	36.72	5.00e-105	374.00
IUUC-Ome-081678	Oryza meridionalis	38.68	2.00e-94	339.00
IUUC-Oni-082545	Oryza nivara	39.13	2.00e-94	339.00
IUUC-Opu-083981	Oryza punctata	39.13	1.00e-115	409.00
IUUC-Oru-084317	Oryza rufipogon	38.49	2.00e-94	340.00
IUUC-Osa-085294	Oryza sativa	39.32	4.00e-94	338.00
IUUC-Ppe-102097	Prunus persica	65.88	0.00e+00	833.00
IUUC-Sit-110113	Setaria italica	39.49	3.00e-123	435.00
IUUC-Stu-112861	Solanum tuberosum	60.38	0.00e+00	842.00
IUUC-Sbi-114188	Sorghum bicolor	37.66	8.00e-115	407.00
IUUC-Tca-121206	Theobroma cacao	68.52	0.00e+00	944.00
IUUC-Tae-125504	Triticum aestivum	37.39	3.00e-129	455.00
IUUC-Tur-126514	Triticum urartu	37.72	1.00e-107	382.00
IUUC-Vvi-130884	Vitis vinifera	64.91	0.00e+00	842.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence