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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007145
UUCD1 version UUC-ArT-00463
Ensembl Protein ID AT4G29860.1
UniProt Accession Q3MV14; Q8GW99; Q9SZQ7; DSE1_ARATH
Genbank Protein ID BAE44475.1; CAB43661.1; CAB79744.1; AEE85686.1; BAC43565.1; BAD44334.1
Protein Name Protein DECREASED SIZE EXCLUSION LIMIT 1; Protein ALUMINUM TOLERANT 2; Protein EMBRYO DEFECTIVE 2757; Protein TANMEI
Genbank Nucleotide ID AB191306; AL050352; AL161575; CP002687; AK118989; AK176571
Gene Name DSE1; ALT2; EMB2757; TAN; At4g29860; F27B13.100
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G29860 AT4G29860.1 AT4G29860.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.30e-23 82.2 15 46
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH  sv +++f ++  ll +Gs Dg +++WD+
   Q: 15   GHRHSVMDVSFhPSkSLLFTGSADGELRIWDT 46
           8***********77799**************7 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Involved in the formation of X-, Y-shaped and twinned plasmodesmata (PD), thus modelating PD size exclusion limit and regulating cell-to-cell transport (PubMed:22411811). Cell cycle checkpoint regulator that monitors and responds to DNA damage such as DNA cross-links, and triggers the halt of the cell cycle progression in the presence of DNA cross-linking agents. Mediates the active process of aluminum- (Al) dependent root growth inhibition and thus is required for response to Al toxicity (PubMed:22345493). Required for both early and late phases of embryo development as well as during seedling growth (PubMed:16113228, PubMed:15266054). Essential for signal transduction and development of both male and female organs (PubMed:22411811).
 Involved in the formation of X-, Y-shaped and twinned plasmodesmata (PD), thus modelating PD size exclusion limit and regulating cell-to-cell transport (PubMed:22411811). Cell cycle checkpoint regulator that monitors and responds to DNA damage such as DNA cross-links, and triggers the halt of the cell cycle progression in the presence of DNA cross-linking agents. Mediates the active process of aluminum- (Al) dependent root growth inhibition and thus is required for response to Al toxicity (PubMed:22345493). Required for both early and late phases of embryo development as well as during seedling growth (PubMed:16113228, PubMed:15266054). Essential for signal transduction and development of both male and female organs (PubMed:22411811).
Protein Sequence
(Fasta)
MSKRPPPDPV AVLRGHRHSV MDVSFHPSKS LLFTGSADGE LRIWDTIQHR AVSSAWAHSR 60
ANGVLAVAAS PWLGEDKIIS QGRDGTVKCW DIEDGGLSRD PLLILETCAY HFCKFSLVKK 120
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Protein Fasta Sequence


>IUUC-Ath-007145|E3,WD_repeat|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
TCGGTGTTCC TGTTGTTAAA GTCTGAGACT TGGATTCGAT TAAGTTGTGT GTTCGCTTGG 60
TTTCTCTATT ACAAGAGTTT GGTTTTGTGT AGTAGTTGAA TCAGAGATGA GTAAGAGACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007145|E3,WD_repeat|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0217--Developmental protein
KW-0227--DNA damage
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0048700--P:acquisition of desiccation tolerance in seed
GO:0007049--P:cell cycle
GO:0006974--P:cellular response to DNA damage stimulus
GO:0031570--P:DNA integrity checkpoint
GO:0009793--P:embryo development ending in seed dormancy
GO:0048481--P:plant ovule development
GO:0009663--P:plasmodesma organization
GO:0010497--P:plasmodesmata-mediated intercellular transport
GO:0009555--P:pollen development
GO:0071158--P:positive regulation of cell cycle arrest
GO:0006282--P:regulation of DNA repair
GO:2000280--P:regulation of root development
GO:0010044--P:response to aluminum ion
GO:0072718--P:response to cisplatin
KEGG ath:AT4G29860
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000703 Aegilops tauschii 45.30 6.00e-94 337.00
IUUC-Aml-001556 Ailuropoda melanoleuca 29.26 6.00e-33 134.00
IUUC-Atr-002691 Amborella trichopoda 54.81 6.00e-126 443.00
IUUC-Apl-003227 Anas platyrhynchos 30.59 2.00e-39 155.00
IUUC-Aly-006168 Arabidopsis lyrata 94.30 0.00e+00 751.00
IUUC-Acl-008132 Aspergillus clavatus 29.50 5.00e-15 74.70
IUUC-Afl-008655 Aspergillus flavus 24.94 4.00e-25 108.00
IUUC-Afu-008778 Aspergillus fumigatus 26.49 2.00e-24 106.00
IUUC-Ang-009760 Aspergillus niger 27.20 1.00e-25 110.00
IUUC-Bgr-012119 Blumeria graminis 29.14 1.00e-28 120.00
IUUC-Bta-012556 Bos taurus 28.50 6.00e-33 134.00
IUUC-Bci-013869 Botrytis cinerea 28.91 4.00e-14 71.60
IUUC-Bdi-014151 Brachypodium distachyon 53.28 8.00e-113 399.00
IUUC-Bol-016319 Brassica oleracea 86.23 0.00e+00 686.00
IUUC-Bra-016675 Brassica rapa 86.79 0.00e+00 688.00
IUUC-Cja-019523 Callithrix jacchus 29.21 8.00e-33 133.00
IUUC-Cfa-021217 Canis familiaris 35.41 4.00e-29 121.00
IUUC-Cpo-021506 Cavia porcellus 29.17 1.00e-31 129.00
IUUC-Csa-023674 Chlorocebus sabaeus 29.47 3.00e-32 131.00
IUUC-Cgl-026723 Colletotrichum gloeosporioides 25.40 2.00e-19 89.40
IUUC-Cne-026836 Cryptococcus neoformans 22.38 8.00e-12 64.30
IUUC-Cme-027295 Cyanidioschyzon merolae 25.77 2.00e-09 56.20
IUUC-Dre-027592 Danio rerio 28.72 4.00e-36 144.00
IUUC-Dno-029880 Dasypus novemcinctus 35.98 2.00e-29 122.00
IUUC-Dor-030266 Dipodomys ordii 35.98 4.00e-26 110.00
IUUC-Dse-031212 Dothistroma septosporum 29.50 3.00e-29 122.00
IUUC-Dme-032209 Drosophila melanogaster 25.85 8.00e-23 100.00
IUUC-Eca-033371 Equus caballus 29.44 2.00e-33 135.00
IUUC-Fca-035558 Felis catus 28.61 4.00e-33 134.00
IUUC-Fal-036794 Ficedula albicollis 31.78 2.00e-40 159.00
IUUC-Gmo-038742 Gadus morhua 28.17 3.00e-33 135.00
IUUC-Gga-040868 Gallus gallus 29.64 2.00e-40 158.00
IUUC-Gac-041646 Gasterosteus aculeatus 30.00 1.00e-39 156.00
IUUC-Gma-044269 Glycine max 62.60 5.00e-140 489.00
IUUC-Ggo-044553 Gorilla gorilla 29.44 4.00e-33 134.00
IUUC-Hsa-046217 Homo sapiens 29.71 3.00e-33 134.00
IUUC-Hvu-047647 Hordeum vulgare 51.71 5.00e-111 393.00
IUUC-Itr-048649 Ictidomys tridecemlineatus 28.65 1.00e-30 126.00
IUUC-Lch-050134 Latimeria chalumnae 27.98 4.00e-35 141.00
IUUC-Lpe-051524 Leersia perrieri 49.61 2.00e-93 334.00
IUUC-Loc-051757 Lepisosteus oculatus 29.61 4.00e-34 137.00
IUUC-Laf-053733 Loxodonta africana 35.35 1.00e-29 122.00
IUUC-Mcc-055477 Macaca mulatta 28.74 4.00e-25 107.00
IUUC-Mor-057289 Magnaporthe oryzae 24.45 4.00e-13 68.90
IUUC-Mpo-057309 Magnaporthe poae 26.07 6.00e-13 68.20
IUUC-Mtr-058616 Medicago truncatula 59.95 2.00e-125 441.00
IUUC-Mga-059637 Meleagris gallopavo 26.25 7.00e-20 89.70
IUUC-Mvi-060385 Microbotryum violaceum 23.92 2.00e-22 99.40
IUUC-Mmr-061675 Microcebus murinus 29.35 4.00e-31 127.00
IUUC-Mdo-062782 Monodelphis domestica 29.79 3.00e-33 135.00
IUUC-Mmu-064058 Mus musculus 30.55 3.00e-38 151.00
IUUC-Mac-065262 Musa acuminata 57.65 2.00e-132 464.00
IUUC-Mpu-066633 Mustela putorius furo 29.03 4.00e-26 111.00
IUUC-Mlu-067333 Myotis lucifugus 34.93 2.00e-29 122.00
IUUC-Nfi-068581 Neosartorya fischeri 26.37 2.00e-26 112.00
IUUC-Ncr-068680 Neurospora crassa 27.78 3.00e-18 85.90
IUUC-Nle-069485 Nomascus leucogenys 39.64 1.00e-29 123.00
IUUC-Oan-073361 Ornithorhynchus anatinus 37.58 6.00e-25 107.00
IUUC-Ocu-073923 Oryctolagus cuniculus 25.65 3.00e-24 105.00
IUUC-Oba-075743 Oryza barthii 48.02 1.00e-99 356.00
IUUC-Obr-076879 Oryza brachyantha 54.32 7.00e-109 386.00
IUUC-Ogl-077813 Oryza glaberrima 53.26 1.00e-111 395.00
IUUC-Ogu-078196 Oryza glumaepatula 48.02 1.00e-99 356.00
IUUC-Oin-080131 Oryza indica 52.99 2.00e-110 391.00
IUUC-Olo-080613 Oryza longistaminata 56.84 6.00e-60 223.00
IUUC-Ome-081912 Oryza meridionalis 49.22 2.00e-100 358.00
IUUC-Oni-082813 Oryza nivara 47.97 4.00e-100 357.00
IUUC-Opu-083663 Oryza punctata 52.63 4.00e-116 410.00
IUUC-Oru-085102 Oryza rufipogon 49.48 8.00e-101 359.00
IUUC-Osa-086204 Oryza sativa 52.99 2.00e-110 391.00
IUUC-Ola-086541 Oryzias latipes 30.23 5.00e-33 134.00
IUUC-Olu-087776 Ostreococcus lucimarinus 38.32 2.00e-20 91.30
IUUC-Oga-088039 Otolemur garnettii 30.16 2.00e-31 129.00
IUUC-Oar-089515 Ovis aries 38.32 3.00e-16 78.60
IUUC-Ptr-091291 Pan troglodytes 29.44 4.00e-33 134.00
IUUC-Pan-092644 Papio anubis 29.37 8.00e-32 130.00
IUUC-Psi-093646 Pelodiscus sinensis 30.49 1.00e-39 156.00
IUUC-Ppa-095698 Physcomitrella patens 40.16 2.00e-77 281.00
IUUC-Pfo-096601 Poecilia formosa 30.67 1.00e-37 149.00
IUUC-Pab-098407 Pongo abelii 29.47 8.00e-34 136.00
IUUC-Pop-099193 Populus trichocarpa 65.37 5.00e-150 523.00
IUUC-Pca-100366 Procavia capensis 27.51 9.00e-27 113.00
IUUC-Ppe-101608 Prunus persica 64.62 5.00e-147 513.00
IUUC-Pva-102775 Pteropus vampyrus 33.20 7.00e-29 120.00
IUUC-Pte-104132 Pyrenophora teres 26.01 5.00e-16 78.60
IUUC-Rno-105626 Rattus norvegicus 28.99 1.00e-33 136.00
IUUC-Sha-106539 Sarcophilus harrisii 29.02 2.00e-31 129.00
IUUC-Sja-107694 Schizosaccharomyces japonicus 26.61 5.00e-24 104.00
IUUC-Spo-108326 Schizosaccharomyces pombe 25.61 1.00e-18 86.70
IUUC-Smo-108756 Selaginella moellendorffii 43.11 4.00e-87 314.00
IUUC-Sit-109771 Setaria italica 56.10 2.00e-124 438.00
IUUC-Sly-111138 Solanum lycopersicum 60.72 1.00e-138 484.00
IUUC-Stu-112425 Solanum tuberosum 61.50 4.00e-140 489.00
IUUC-Sbi-114356 Sorghum bicolor 54.83 3.00e-116 411.00
IUUC-Ssc-115256 Sus scrofa 39.19 2.00e-28 119.00
IUUC-Tgu-116774 Taeniopygia guttata 31.49 4.00e-30 124.00
IUUC-Tru-117900 Takifugu rubripes 30.75 1.00e-34 139.00
IUUC-Tsy-119540 Tarsius syrichta 46.05 1.00e-15 76.30
IUUC-Tni-120252 Tetraodon nigroviridis 29.46 3.00e-38 151.00
IUUC-Tca-121717 Theobroma cacao 64.94 2.00e-147 514.00
IUUC-Tre-122069 Trichoderma reesei 25.88 5.00e-20 91.30
IUUC-Tvi-122673 Trichoderma virens 26.19 5.00e-22 97.80
IUUC-Tae-123804 Triticum aestivum 52.23 2.00e-111 394.00
IUUC-Tme-127222 Tuber melanosporum 35.00 4.00e-16 78.60
IUUC-Ttr-129240 Tursiops truncatus 37.57 2.00e-28 118.00
IUUC-Uma-129437 Ustilago maydis 31.82 2.00e-13 69.30
IUUC-Vda-129913 Verticillium dahliae 23.94 2.00e-16 79.30
IUUC-Vvi-131718 Vitis vinifera 65.80 4.00e-152 530.00
IUUC-Xtr-132109 Xenopus tropicalis 27.79 1.00e-34 139.00
IUUC-Xma-133366 Xiphophorus maculatus 31.19 6.00e-38 150.00
IUUC-Zma-135563 Zea mays 47.63 5.00e-98 350.00
Created Date 25-Jun-2017

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