iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007154

UUCD1 version

UUC-ArT-00578

Ensembl Protein ID

AT3G61390.2

UniProt Accession

Q8GZ84; Q9M2C5; PUB36_ARATH

Genbank Protein ID

CAB71069.1; AEE80195.1; BAC41832.1; AAO63431.1

Protein Name

U-box domain-containing protein 36; Plant U-box protein 36; RING-type E3 ubiquitin transferase PUB36

Genbank Nucleotide ID

AL132962; CP002686; AK117154; BT005367

Gene Name

PUB36; At3g61390; F2A19.1; T20K12.290

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G61390	AT3G61390.1	AT3G61390.1
AT3G61390	AT3G61390.2	AT3G61390.2
AT3G61390	AT3G61390.5	AT3G61390.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.50e-25	89.2	353	421

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           +p++f+CpI+ ++M+dP+v+++G ty+ ++I +w+++g++t+P+ +++l +++lvPnl+lr+ iq+w++
   Q: 353  PPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQ 421
           79*****************************************************************97 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG 60
KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL QICRQMQVTA EIIYIETDSV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGCGGTAAGG CTTTTAAGGA ACACGGTTTC GTGATTAGAT ACGTGTTTGT CTTATAATTG 60
AAACCTTTTC CTCTTATCCC TATATATACT ATATACTTGG CTCATCAAAT ACTCTGTTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR014729--Rossmann-like_a/b/a_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT3G61390

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006215	Arabidopsis lyrata	77.18	2.00e-169	588.00
IUUC-Bol-015248	Brassica oleracea	67.05	8.00e-168	582.00
IUUC-Bra-017454	Brassica rapa	68.43	2.00e-171	594.00
IUUC-Lpe-051007	Leersia perrieri	33.17	1.00e-50	195.00
IUUC-Oba-075683	Oryza barthii	28.87	1.00e-37	150.00
IUUC-Obr-076714	Oryza brachyantha	29.21	1.00e-32	133.00
IUUC-Ogl-077008	Oryza glaberrima	28.87	1.00e-37	150.00
IUUC-Ogu-077959	Oryza glumaepatula	32.56	5.00e-53	202.00
IUUC-Oin-079704	Oryza indica	32.14	3.00e-41	162.00
IUUC-Olo-080236	Oryza longistaminata	32.45	2.00e-47	184.00
IUUC-Ome-081842	Oryza meridionalis	33.49	7.00e-59	220.00
IUUC-Oni-082287	Oryza nivara	32.33	2.00e-52	200.00
IUUC-Opu-084030	Oryza punctata	30.54	2.00e-43	169.00
IUUC-Oru-084389	Oryza rufipogon	32.38	5.00e-42	164.00
IUUC-Osa-085772	Oryza sativa	32.38	5.00e-42	164.00
IUUC-Sit-110620	Setaria italica	32.65	9.00e-46	177.00
IUUC-Tur-126053	Triticum urartu	38.42	8.00e-30	124.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence