iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mac-065100

Ensembl Protein ID

GSMUA_Achr4P05370_001

UniProt Accession

M0SLA4; M0SLA4_MUSAM

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GSMUA_Achr4G05370_001	GSMUA_Achr4T05370_001	GSMUA_Achr4P05370_001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.50e-38	127.4	157	195
UBD/Beta-Prp	1.60e-56	192.5	30	271

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 157  GHSRGVNAIKFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 195
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
           +h+s ++c+k+  + +++l+tg++d+++ +w + +++++ slsgh ++v +v+f++++ + + g+  + +k+wdl+  k+v+tl+gh 
   Q: 30   AHSSSVNCLKIgRKTSRVLVTGGEDNKVNIWAIGKPNAILSLSGHMSAVESVSFDSSEILVAAGAASGSVKLWDLEEAKIVRTLTGHR 117
           79999******999*******************************************9666677777********************* PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
           ++  +++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h+++
   Q: 118  SNCIAVDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHSRGVNAIKFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKF-HEGQ 203
           ************************************.*********************************************9.**** PP
   S: 183  vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           +++++f++  + l++gs d+tvklwdl+t e + +    t+ v+s+ f p++  l++g  ++s+++  W
   Q: 204  IQCIDFHPHEFLLATGSADRTVKLWDLETFELIGSAGPETSGVRSMTFNPDGRTLLCGL-HESLKVvsW 271
           *************************************************9999999995.666666556 PP

Organism

Musa acuminata

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MATTKRAYKL RILFFFFSRP TRVNLEEFVA HSSSVNCLKI GRKTSRVLVT GGEDNKVNIW 60
AIGKPNAILS LSGHMSAVES VSFDSSEILV AAGAASGSVK LWDLEEAKIV RTLTGHRSNC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGACCA CCAAGCGCGC TTACAAGCTG CGTATCCTTT TTTTTTTTTT TTCTCGCCCG 60
ACTCGGTTCA ATTTTCTTTT TCTAGGCTTT TTTATTTTCT TGGGGTAGAG ACTAGAAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002899	Amborella trichopoda	65.35	0.00e+00	988.00
IUUC-Aca-004635	Anolis carolinensis	51.19	2.00e-88	319.00
IUUC-Ath-007606	Arabidopsis thaliana	52.74	0.00e+00	795.00
IUUC-Bol-016374	Brassica oleracea	51.35	0.00e+00	785.00
IUUC-Bra-017068	Brassica rapa	51.85	0.00e+00	769.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	42.41	6.00e-82	298.00
IUUC-Cin-025156	Ciona intestinalis	47.08	3.00e-85	308.00
IUUC-Csv-025962	Ciona savignyi	49.65	1.00e-85	308.00
IUUC-Dme-032188	Drosophila melanogaster	37.29	6.00e-56	211.00
IUUC-Gmo-038692	Gadus morhua	50.45	2.00e-101	362.00
IUUC-Gac-042004	Gasterosteus aculeatus	52.38	1.00e-96	346.00
IUUC-Gma-044134	Glycine max	60.79	0.00e+00	882.00
IUUC-Loc-052623	Lepisosteus oculatus	52.68	2.00e-96	346.00
IUUC-Mtr-058053	Medicago truncatula	59.85	0.00e+00	872.00
IUUC-Ont-071883	Oreochromis niloticus	50.00	7.00e-97	347.00
IUUC-Oin-079811	Oryza indica	70.87	0.00e+00	671.00
IUUC-Olo-080245	Oryza longistaminata	71.09	0.00e+00	674.00
IUUC-Ola-087483	Oryzias latipes	44.90	4.00e-93	335.00
IUUC-Pop-099149	Populus trichocarpa	62.94	0.00e+00	966.00
IUUC-Ppe-101237	Prunus persica	63.28	0.00e+00	969.00
IUUC-Smo-109379	Selaginella moellendorffii	68.49	1.00e-162	566.00
IUUC-Sly-111307	Solanum lycopersicum	59.68	0.00e+00	895.00
IUUC-Stu-112053	Solanum tuberosum	55.54	0.00e+00	837.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.15	4.00e-89	322.00
IUUC-Tca-121185	Theobroma cacao	57.14	0.00e+00	929.00
IUUC-Tae-125307	Triticum aestivum	48.24	0.00e+00	788.00
IUUC-Tur-126411	Triticum urartu	60.80	7.00e-163	567.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence