iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091658

Ensembl Protein ID

ENSPTRP00000046782.3

UniProt Accession

H2R492; H2R492_PANTR

Genbank Protein ID

JAA15125.1

Protein Name

DDB1 and CUL4 associated factor 4

Genbank Nucleotide ID

AACZ03096366

Gene Name

DCAF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000006507.5	ENSPTRT00000046440.3	ENSPTRP00000046782.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-08	32.8	369	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H + vt+++  +d  +l ++   g+ik+WDlrt ++++
   Q: 369  HDSAVTSVRIlQDeQYLMASDMAGKIKLWDLRTTKCVR 406
           999******998889****9999************987 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MKKSRWQSRR RHGRRSHQQN PWFRLRDSED RSDSRAAQPA HDSSHGDDES PSTSSGTAGT 60
SSVPELPGFY FDPEKKRYFR LLPGHNNCNP LTKESIRQKE MESKRLRLLQ EEDRRKKIAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCAACTCCT GCAGAGCTGA GCCCGAAGGG AATCCGGAAG GGACACGCTG AACAGGTAGG 60
ACTGTGCTGC CTGTGGTGCC TACTGGCGTC GATTCGAGGG CTGCCGCGCT CCCGCTGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0008380--P:RNA splicing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001176	Aegilops tauschii	39.82	1.00e-13	69.30
IUUC-Aml-001929	Ailuropoda melanoleuca	87.06	0.00e+00	823.00
IUUC-Atr-002556	Amborella trichopoda	30.59	3.00e-14	73.20
IUUC-Apl-003177	Anas platyrhynchos	70.62	4.00e-175	607.00
IUUC-Aca-004610	Anolis carolinensis	65.58	0.00e+00	627.00
IUUC-Aly-005883	Arabidopsis lyrata	23.74	5.00e-17	82.40
IUUC-Ath-006668	Arabidopsis thaliana	23.48	2.00e-17	83.60
IUUC-Afl-008573	Aspergillus flavus	21.78	3.00e-07	49.70
IUUC-Aor-010226	Aspergillus oryzae	21.29	7.00e-05	41.60
IUUC-Ate-010340	Aspergillus terreus	22.40	2.00e-10	60.10
IUUC-Ame-010690	Astyanax mexicanus	60.25	8.00e-156	543.00
IUUC-Bta-012668	Bos taurus	81.50	0.00e+00	739.00
IUUC-Bdi-014848	Brachypodium distachyon	34.01	2.00e-14	73.60
IUUC-Bol-016035	Brassica oleracea	33.14	2.00e-15	77.00
IUUC-Bra-016687	Brassica rapa	32.00	2.00e-14	73.60
IUUC-Cja-019560	Callithrix jacchus	89.31	6.00e-83	298.00
IUUC-Cfa-020441	Canis familiaris	86.85	0.00e+00	798.00
IUUC-Cpo-021299	Cavia porcellus	78.45	0.00e+00	782.00
IUUC-Csa-023185	Chlorocebus sabaeus	97.06	0.00e+00	917.00
IUUC-Cho-024353	Choloepus hoffmanni	80.25	0.00e+00	795.00
IUUC-Dno-029890	Dasypus novemcinctus	80.38	0.00e+00	741.00
IUUC-Dor-030618	Dipodomys ordii	86.81	3.00e-84	305.00
IUUC-Ete-032557	Echinops telfairi	68.02	2.00e-134	472.00
IUUC-Eca-033466	Equus caballus	84.70	0.00e+00	830.00
IUUC-Eeu-034995	Erinaceus europaeus	72.93	2.00e-146	511.00
IUUC-Fca-036199	Felis catus	86.16	0.00e+00	802.00
IUUC-Fal-036717	Ficedula albicollis	68.97	7.00e-172	596.00
IUUC-Gmo-039201	Gadus morhua	60.46	5.00e-152	530.00
IUUC-Gga-040398	Gallus gallus	70.90	7.00e-162	563.00
IUUC-Gac-042391	Gasterosteus aculeatus	60.27	1.00e-159	556.00
IUUC-Gma-043880	Glycine max	28.30	3.00e-12	66.60
IUUC-Ggo-045348	Gorilla gorilla	99.16	0.00e+00	931.00
IUUC-Hsa-046746	Homo sapiens	99.58	0.00e+00	937.00
IUUC-Hvu-047825	Hordeum vulgare	33.14	2.00e-15	77.00
IUUC-Itr-048472	Ictidomys tridecemlineatus	84.07	0.00e+00	817.00
IUUC-Lch-050272	Latimeria chalumnae	59.41	4.00e-151	528.00
IUUC-Lpe-051618	Leersia perrieri	28.00	8.00e-14	71.60
IUUC-Loc-051772	Lepisosteus oculatus	61.86	6.00e-164	570.00
IUUC-Laf-054577	Loxodonta africana	71.40	0.00e+00	629.00
IUUC-Mcc-055284	Macaca mulatta	82.18	0.00e+00	735.00
IUUC-Meu-056721	Macropus eugenii	62.69	5.00e-88	317.00
IUUC-Mtr-058472	Medicago truncatula	30.38	1.00e-13	71.20
IUUC-Mga-059238	Meleagris gallopavo	70.62	1.00e-164	572.00
IUUC-Mmr-061642	Microcebus murinus	90.19	0.00e+00	718.00
IUUC-Mdo-062030	Monodelphis domestica	74.02	0.00e+00	639.00
IUUC-Mmu-063420	Mus musculus	81.21	0.00e+00	795.00
IUUC-Mac-065231	Musa acuminata	35.77	2.00e-17	83.60
IUUC-Mpu-065692	Mustela putorius furo	87.27	0.00e+00	824.00
IUUC-Mlu-067428	Myotis lucifugus	82.76	0.00e+00	788.00
IUUC-Nle-070145	Nomascus leucogenys	98.32	0.00e+00	948.00
IUUC-Opr-071081	Ochotona princeps	77.00	0.00e+00	710.00
IUUC-Ont-071302	Oreochromis niloticus	62.21	5.00e-156	543.00
IUUC-Oan-073494	Ornithorhynchus anatinus	56.06	4.00e-128	451.00
IUUC-Ocu-073925	Oryctolagus cuniculus	86.41	0.00e+00	766.00
IUUC-Oba-075797	Oryza barthii	30.26	7.00e-13	68.60
IUUC-Obr-076014	Oryza brachyantha	31.58	3.00e-14	73.20
IUUC-Ogl-077201	Oryza glaberrima	30.26	8.00e-13	68.20
IUUC-Ogu-078056	Oryza glumaepatula	30.26	7.00e-13	68.60
IUUC-Oin-080062	Oryza indica	30.26	6.00e-13	68.90
IUUC-Olo-080869	Oryza longistaminata	30.26	3.00e-13	70.90
IUUC-Ome-081820	Oryza meridionalis	30.26	3.00e-13	69.70
IUUC-Oni-082497	Oryza nivara	30.26	6.00e-13	68.60
IUUC-Opu-083780	Oryza punctata	38.82	1.00e-11	65.10
IUUC-Oru-085091	Oryza rufipogon	30.26	6.00e-13	68.60
IUUC-Osa-085725	Oryza sativa	30.26	6.00e-13	68.60
IUUC-Ola-087033	Oryzias latipes	60.83	4.00e-144	504.00
IUUC-Oga-088861	Otolemur garnettii	85.56	0.00e+00	798.00
IUUC-Oar-090048	Ovis aries	83.58	0.00e+00	788.00
IUUC-Pan-092873	Papio anubis	95.38	0.00e+00	932.00
IUUC-Psi-093421	Pelodiscus sinensis	70.23	1.00e-175	609.00
IUUC-Pma-094216	Petromyzon marinus	45.00	5.00e-94	337.00
IUUC-Ppa-095186	Physcomitrella patens	47.37	3.00e-10	60.10
IUUC-Pfo-096178	Poecilia formosa	58.11	4.00e-147	514.00
IUUC-Pab-098037	Pongo abelii	75.63	3.00e-176	610.00
IUUC-Pop-099334	Populus trichocarpa	34.16	4.00e-16	77.80
IUUC-Pca-100845	Procavia capensis	70.53	0.00e+00	678.00
IUUC-Pva-103203	Pteropus vampyrus	85.12	0.00e+00	819.00
IUUC-Rno-105675	Rattus norvegicus	82.14	0.00e+00	771.00
IUUC-Sha-107389	Sarcophilus harrisii	72.87	0.00e+00	643.00
IUUC-Sja-107847	Schizosaccharomyces japonicus	24.46	4.00e-14	72.40
IUUC-Spo-108190	Schizosaccharomyces pombe	24.75	3.00e-12	65.90
IUUC-Sit-110421	Setaria italica	43.56	1.00e-15	77.00
IUUC-Sly-110888	Solanum lycopersicum	23.88	1.00e-07	51.60
IUUC-Sar-113185	Sorex araneus	64.79	3.00e-161	561.00
IUUC-Sbi-114182	Sorghum bicolor	40.00	1.00e-14	72.80
IUUC-Ssc-116005	Sus scrofa	86.16	0.00e+00	824.00
IUUC-Tgu-117023	Taeniopygia guttata	66.82	3.00e-165	574.00
IUUC-Tru-118221	Takifugu rubripes	58.89	8.00e-153	533.00
IUUC-Tsy-118784	Tarsius syrichta	75.63	0.00e+00	633.00
IUUC-Tni-120072	Tetraodon nigroviridis	60.09	6.00e-154	536.00
IUUC-Tca-121267	Theobroma cacao	26.06	6.00e-18	85.50
IUUC-Tae-124900	Triticum aestivum	32.56	1.00e-15	76.60
IUUC-Tur-126655	Triticum urartu	32.56	2.00e-15	76.30
IUUC-Tbe-127243	Tupaia belangeri	76.01	0.00e+00	689.00
IUUC-Ttr-129237	Tursiops truncatus	76.89	0.00e+00	720.00
IUUC-Vvi-131184	Vitis vinifera	27.54	3.00e-10	59.70
IUUC-Xtr-132006	Xenopus tropicalis	50.80	7.00e-122	430.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence