iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-113984

Ensembl Protein ID

Sb04g031730.1

UniProt Accession

C5Y0X7; C5Y0X7_SORBI

Genbank Protein ID

AFN17367.1; EES05725.1

Protein Name

Tan1-b

Genbank Nucleotide ID

JX122969; CM000763

Gene Name

SORBI_004G280800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g031730	Sb04g031730.1	Sb04g031730.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.20e-17	61.8	183	214

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclafsd.tllvsGsdDgtikvWDlrt 32
           H   v+++a+ + + ++s s Dg+++v+Dlr+
   Q: 183  HDKAVHDIAWGEaGVFASVSADGSVRVFDLRD 214
           8889******55799**************987 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDLPKPPSTA ASSSGAETPN PHAFTCELPH SIYALAFSPG APVLASGSFL EDLHNRVSLL 60
SFDPVRPSAA SFRALPALSF DHPYPPTKLQ FNPRAAAPSL LASSADTLRI WHAPLDDLSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGAGTCCC AGCAGGATCG GCCTCAGCGC AGCTCCGCCC CCAAATCTAT CCACCCCGAT 60
TTCTCCACCC CATGGACCTA CCCAAGCCGC CGTCGACGGC CGCCTCGTCG TCGGGGGCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0045165--P:cell fate commitment
GO:0032880--P:regulation of protein localization
GO:0009733--P:response to auxin
GO:0009723--P:response to ethylene
GO:0010026--P:trichome differentiation

KEGG

sbi:SORBI_04g031730

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006211	Arabidopsis lyrata	64.21	6.00e-106	376.00
IUUC-Ath-006884	Arabidopsis thaliana	63.76	3.00e-106	377.00
IUUC-Ani-009375	Aspergillus nidulans	35.11	5.00e-34	138.00
IUUC-Bdi-014944	Brachypodium distachyon	86.98	6.00e-156	542.00
IUUC-Bol-015620	Brassica oleracea	63.61	1.00e-101	362.00
IUUC-Bra-017045	Brassica rapa	63.61	1.00e-101	362.00
IUUC-Cne-026871	Cryptococcus neoformans	38.17	1.00e-42	166.00
IUUC-Cme-027345	Cyanidioschyzon merolae	39.12	3.00e-44	171.00
IUUC-Hvu-047639	Hordeum vulgare	90.75	5.00e-148	516.00
IUUC-Lpe-051336	Leersia perrieri	86.04	5.00e-147	513.00
IUUC-Mtr-058793	Medicago truncatula	59.33	2.00e-104	370.00
IUUC-Mvi-060379	Microbotryum violaceum	34.44	2.00e-40	159.00
IUUC-Mac-065344	Musa acuminata	58.86	2.00e-87	314.00
IUUC-Oba-075455	Oryza barthii	82.23	9.00e-130	455.00
IUUC-Obr-076064	Oryza brachyantha	80.97	8.00e-134	469.00
IUUC-Ogl-077224	Oryza glaberrima	82.23	9.00e-130	455.00
IUUC-Ogu-078639	Oryza glumaepatula	81.88	6.00e-129	452.00
IUUC-Oin-080194	Oryza indica	81.88	1.00e-129	454.00
IUUC-Olo-080234	Oryza longistaminata	81.88	2.00e-129	454.00
IUUC-Oni-082021	Oryza nivara	81.88	1.00e-129	454.00
IUUC-Opu-083903	Oryza punctata	84.86	3.00e-132	463.00
IUUC-Oru-084738	Oryza rufipogon	82.23	9.00e-130	455.00
IUUC-Osa-085445	Oryza sativa	82.23	9.00e-130	455.00
IUUC-Pop-099260	Populus trichocarpa	63.88	1.00e-105	375.00
IUUC-Ppe-101664	Prunus persica	63.70	4.00e-107	380.00
IUUC-Sja-107768	Schizosaccharomyces japonicus	36.57	7.00e-43	167.00
IUUC-Spo-108014	Schizosaccharomyces pombe	39.22	1.00e-44	172.00
IUUC-Sly-111838	Solanum lycopersicum	61.02	6.00e-107	379.00
IUUC-Stu-112456	Solanum tuberosum	61.02	1.00e-106	378.00
IUUC-Tca-121493	Theobroma cacao	64.14	4.00e-104	370.00
IUUC-Tae-125936	Triticum aestivum	90.04	1.00e-146	511.00
IUUC-Uma-129362	Ustilago maydis	34.02	8.00e-45	174.00
IUUC-Vvi-131483	Vitis vinifera	61.89	2.00e-107	381.00
IUUC-Yli-134419	Yarrowia lipolytica	39.80	4.00e-49	187.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence