iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099188

Ensembl Protein ID

POPTR_0005s02160.1

UniProt Accession

B9N4M6; B9H543; B9N4M6_POPTR

Genbank Protein ID

EEE94093.2

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_1115780; POPTR_0005s02160g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s02160	POPTR_0005s02160.1	POPTR_0005s02160.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-21	76.8	923	955
UBD/Beta-Prp	2.10e-45	156.3	342	665

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH+ +vt+laf ++ ++lvs++ D ++ +W+++
   Q: 923  GHQKRVTGLAFsTNlNILVSSGADAQLCIWSID 955
           8**********9889***************975 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl...................lrslsgheaevtavkfspdgkilvtgseDrti 76
           + h+ s + +++f   + +ll++gs +g i++w++ +                       + +++ +  vt v +spdg++   + + ++i
   Q: 342  SLHPGSAVMSMDFhPSHHTLLLVGSVNGEITLWELISRERlfskpfkiwdmsacslqfqASGFKDASISVTRVAWSPDGNFVGAAFNKHLI 432
           5677778888999444567889999999999999988777789999977777777777666667777779999999999888888888999 PP
   S: 77   kvwdls...tgkcvhtlkghedsvlslsfsp.sg.dklvsGshdrtirv........wdletgqcleetlsghdgvvncvvvhpdg..nll 152
           +++ ++   +  +   + +h   v +l+f   ++   +v+ ++d+ i+         wdl  ++ ++  + gh++ v  ++ h ++  + +
   Q: 433  HLYAYNgpnDLRQHLEIDAHVGGVNDLAFAHpNKqLCVVTCGDDKLIKAiyimlkqvWDLTGRKLFN--FGGHEAPVYNICPHHKEniQFI 521
           9997773224444445557777788888866566467888899999998888999999999988887..8888888877777666547789 PP
   S: 153  vsGslDrtvrlWdl..............................................ktgkllrtltgghtdsvyslsfdsngkelvs 197
           +s + D++++ W                                                + g++ r + g  ++s   ++fd +++++++
   Q: 522  FSTAIDGKIKAWLYdnmgsrvdydapgrwcttmlystdgsrlfscgtskdgesylvewneSEGSIKRSFVGFRKKSAGVVQFDTTQNHFLA 612
           9999999999998888888888888888888888888888888888888888888888888889999998888999999999999999999 PP
   S: 198  gsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiri 248
           +++dg++k+wd+++++++ +  +    ++  ++rf +++++l++ ++D+  +i
   Q: 613  AGDDGQIKFWDMENTNVLTSTDADGglQTLPRLRFNREGNLLAVSTADNGFKI 665
           99999999999999988777666544467777888888888888888887666 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKESVHKLEK ESGFYFNMKY FEEKVLAGEW DEVEKYLAGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRQDK AKGVEILVSD LKVFSTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCTCTCT CTCTCAAGAA ACGCAGCCTT GAAACCCTAG AAGTTGCCTC GATTTCCGTT 60
CTCTGCATAG GTTCAATTAA GCTCCGAGTC GCCTAATCTT GCTTAATTAA GCGTAGATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG

pop:POPTR_0005s02160g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-016367	Brassica oleracea	76.08	0.00e+00	1748.00
IUUC-Bra-017100	Brassica rapa	73.86	0.00e+00	1704.00
IUUC-Hvu-047370	Hordeum vulgare	71.37	0.00e+00	1641.00
IUUC-Lpe-050951	Leersia perrieri	70.60	0.00e+00	1590.00
IUUC-Mac-064660	Musa acuminata	69.98	0.00e+00	1587.00
IUUC-Oba-075415	Oryza barthii	72.24	0.00e+00	1674.00
IUUC-Obr-076726	Oryza brachyantha	72.47	0.00e+00	1690.00
IUUC-Ogl-077810	Oryza glaberrima	72.24	0.00e+00	1674.00
IUUC-Ogu-078090	Oryza glumaepatula	72.24	0.00e+00	1674.00
IUUC-Oin-080158	Oryza indica	71.80	0.00e+00	1667.00
IUUC-Olo-080271	Oryza longistaminata	71.24	0.00e+00	1636.00
IUUC-Ome-081965	Oryza meridionalis	72.41	0.00e+00	1664.00
IUUC-Oni-082421	Oryza nivara	72.15	0.00e+00	1674.00
IUUC-Opu-083912	Oryza punctata	72.24	0.00e+00	1674.00
IUUC-Oru-085201	Oryza rufipogon	72.24	0.00e+00	1674.00
IUUC-Osa-086161	Oryza sativa	72.24	0.00e+00	1674.00
IUUC-Ppe-102061	Prunus persica	80.72	0.00e+00	1864.00
IUUC-Sit-110487	Setaria italica	72.22	0.00e+00	1636.00
IUUC-Sly-111169	Solanum lycopersicum	80.18	0.00e+00	1855.00
IUUC-Stu-112369	Solanum tuberosum	79.74	0.00e+00	1850.00
IUUC-Sbi-113873	Sorghum bicolor	72.77	0.00e+00	1654.00
IUUC-Tae-125707	Triticum aestivum	71.43	0.00e+00	1644.00
IUUC-Tur-126477	Triticum urartu	67.43	0.00e+00	1612.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence