iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098991

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_769183; POPTR_0010s08340g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s08340	POPTR_0010s08340.1	POPTR_0010s08340.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.90e-08	34.8	133	175

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f   ++ ++  p C Hvfh dC+  w       + +++CPlCr
   Q: 133  CAVCLNEFqeaEK-LRRIPnCSHVFHIDCIDVW------LQSNANCPLCR 175
           ********55333.665668*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDLVRKSYGS QSLPPMTSPV GGSSIFGPRT QSSDTSFPII AIAIIGILAT ALLLVSYYIF 60
VIKCCLNWHR IDLLRRFSLS RNRNHEDPLM AYSPSAIESR GLDESVIRSI PVFKFKKEGN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTGCAATAA TCGAGACTCT CCCCAATGGG AACCAGAGAG AAATCCACCT ACTACGTGTG 60
CTTAGCTCAG ACCTTCTGTC TTAAAATAAA ATTTTAGTTT AGTAATTTCA GGCAAAATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0010s08340g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000279	Aegilops tauschii	36.32	1.00e-33	136.00
IUUC-Atr-003120	Amborella trichopoda	43.25	1.00e-54	206.00
IUUC-Aly-006068	Arabidopsis lyrata	59.35	1.00e-89	322.00
IUUC-Ath-006598	Arabidopsis thaliana	59.55	1.00e-89	322.00
IUUC-Bdi-015043	Brachypodium distachyon	47.00	7.00e-23	100.00
IUUC-Bol-015196	Brassica oleracea	58.80	2.00e-85	308.00
IUUC-Bra-017007	Brassica rapa	57.68	7.00e-83	300.00
IUUC-Gma-043661	Glycine max	63.82	2.00e-107	381.00
IUUC-Hvu-047348	Hordeum vulgare	36.63	2.00e-33	135.00
IUUC-Lpe-051091	Leersia perrieri	37.54	4.00e-38	151.00
IUUC-Mtr-057939	Medicago truncatula	60.36	1.00e-88	318.00
IUUC-Mac-064540	Musa acuminata	48.10	2.00e-57	214.00
IUUC-Oba-075181	Oryza barthii	37.72	2.00e-36	145.00
IUUC-Obr-076646	Oryza brachyantha	37.80	3.00e-40	158.00
IUUC-Ogl-077643	Oryza glaberrima	37.72	8.00e-37	146.00
IUUC-Ogu-078678	Oryza glumaepatula	37.72	2.00e-36	145.00
IUUC-Oin-080156	Oryza indica	36.79	9.00e-38	150.00
IUUC-Olo-080454	Oryza longistaminata	37.72	5.00e-38	151.00
IUUC-Ome-081367	Oryza meridionalis	34.93	1.00e-27	115.00
IUUC-Oni-082085	Oryza nivara	37.50	2.00e-36	146.00
IUUC-Opu-083709	Oryza punctata	36.62	7.00e-38	150.00
IUUC-Oru-084579	Oryza rufipogon	37.37	2.00e-35	142.00
IUUC-Osa-085466	Oryza sativa	37.37	5.00e-36	144.00
IUUC-Ppe-101210	Prunus persica	72.75	3.00e-117	414.00
IUUC-Sit-110640	Setaria italica	33.33	7.00e-34	137.00
IUUC-Sly-111856	Solanum lycopersicum	58.47	1.00e-88	319.00
IUUC-Stu-111992	Solanum tuberosum	65.48	4.00e-98	350.00
IUUC-Tca-121116	Theobroma cacao	78.83	2.00e-141	494.00
IUUC-Tae-124958	Triticum aestivum	36.77	3.00e-34	138.00
IUUC-Tur-126127	Triticum urartu	34.98	7.00e-32	130.00
IUUC-Vvi-131101	Vitis vinifera	74.54	9.00e-107	379.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence