iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s10990	POPTR_0012s10990.1	POPTR_0012s10990.1
POPTR_0012s10990	POPTR_0012s10990.2	POPTR_0012s10990.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-13	50.1	317	344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf....sdtllvsGsdDgtikvWD 29
            +++++f    + t +v+G+ D+ + +W+
   Q: 317  IINGIEFmpweN-TCFVTGGSDHGVVLWN 344
           5999**997533.99*************9 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSTPSPILKR PKLEQRNNDD DNEASLNQKS NENNGREEEE DSIEEQKVAF IALIEHRSHE 60
VQHLKQRLSY YKTQLVEAEK RLEDSQTKLA RLSGRSNASV ANKPSVENGI KKVKMERKSP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTCGTCGAC AAAACAAAGC AAACCCAAAA CCGCACTGTA CAAACACACA GAGAGACACA 60
AAGAAAAAAT GAGCACGCCT TCTCCGATCC TGAAAAGGCC AAAACTAGAG CAGCGAAACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

pop:POPTR_0012s10990g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000679	Aegilops tauschii	55.30	3.00e-131	461.00
IUUC-Atr-002878	Amborella trichopoda	51.80	7.00e-140	489.00
IUUC-Aly-006473	Arabidopsis lyrata	65.55	0.00e+00	630.00
IUUC-Ath-006806	Arabidopsis thaliana	65.00	3.00e-179	620.00
IUUC-Bdi-014216	Brachypodium distachyon	61.56	2.00e-132	465.00
IUUC-Bol-015463	Brassica oleracea	62.40	0.00e+00	625.00
IUUC-Bra-017074	Brassica rapa	59.73	1.00e-178	618.00
IUUC-Gma-042665	Glycine max	64.23	0.00e+00	694.00
IUUC-Hvu-047292	Hordeum vulgare	63.80	1.00e-111	395.00
IUUC-Lpe-051627	Leersia perrieri	50.48	4.00e-142	497.00
IUUC-Mtr-058789	Medicago truncatula	64.78	0.00e+00	636.00
IUUC-Mac-065472	Musa acuminata	57.36	6.00e-169	586.00
IUUC-Oba-074995	Oryza barthii	58.73	4.00e-133	467.00
IUUC-Obr-076006	Oryza brachyantha	50.28	3.00e-144	504.00
IUUC-Ogl-077176	Oryza glaberrima	52.07	5.00e-141	494.00
IUUC-Ogu-078267	Oryza glumaepatula	52.07	6.00e-141	493.00
IUUC-Oin-079742	Oryza indica	62.71	6.00e-136	477.00
IUUC-Olo-080890	Oryza longistaminata	59.20	3.00e-122	431.00
IUUC-Ome-081454	Oryza meridionalis	51.87	1.00e-140	492.00
IUUC-Oni-083009	Oryza nivara	50.00	3.00e-137	481.00
IUUC-Opu-083781	Oryza punctata	63.22	2.00e-134	471.00
IUUC-Oru-084517	Oryza rufipogon	50.00	3.00e-137	481.00
IUUC-Osa-085484	Oryza sativa	62.71	6.00e-136	476.00
IUUC-Ppa-095859	Physcomitrella patens	44.07	1.00e-111	396.00
IUUC-Ppe-101833	Prunus persica	68.02	0.00e+00	706.00
IUUC-Smo-109600	Selaginella moellendorffii	38.97	1.00e-45	176.00
IUUC-Sit-109887	Setaria italica	63.53	2.00e-137	482.00
IUUC-Stu-112708	Solanum tuberosum	62.53	5.00e-160	557.00
IUUC-Sbi-114727	Sorghum bicolor	48.45	4.00e-142	497.00
IUUC-Tca-121644	Theobroma cacao	70.99	0.00e+00	700.00
IUUC-Tae-125240	Triticum aestivum	62.29	7.00e-140	490.00
IUUC-Vvi-131460	Vitis vinifera	67.50	0.00e+00	687.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence