iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107961

Ensembl Protein ID

EEB09367

UniProt Accession

B6K763; B6K763_SCHJY

Genbank Protein ID

EEB09367.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

KE651168

Gene Name

SJAG_04569

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_04569	EEB09367	EEB09367

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-40	133.3	51	88
UBD/Beta-Prp	2.20e-76	254.8	3	331

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH ++v+++af ++ +l+vsG+dD ++ vW+++t +ll
   Q: 51   GHDGPVRGIAFhPTqPLFVSGGDDYKVNVWNYKTKKLL 88
           8***********888****************9988765 PP

UBD/Beta-Prp

   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           + t +++++s+ + ++f+p +++l+t+  +gti++wd+++g+ll+++ gh+++v+ + f+p+++++v+g++D+ ++vw+++t k + +l gh d+v+ ++f
   Q: 3    MLTKFESKSSRAKGIAFHPTQPWLLTSLHNGTIQLWDYRMGTLLERFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKTKKLLFSLCGHMDYVRVCTF 103
           67889999********************************************************************************************* PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl................................ktgkl 171
           + +  +++s s+d+tir+w+++++ c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                                +t+ +
   Q: 104  HHEYPWILSCSDDQTIRIWNWQSRNCIA-ILTGHSHYVMCAAFHPKEDLIVSASLDQTVRVWDIsglrkkhatpislsledqltqshssisndlfgSTDAV 203
           ****************************.****************************************************************99766666 PP
   S: 172  lrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisv 270
           ++   +gh++ v++ +f+++ + ++s+++d+ vklw + +++   v+t++gh +nv++  f+p +++++s+s+D+++r+Wdl  +  +kt+ ++n++++ +
   Q: 204  VKFVLEGHDRGVNWCAFHPTLPLIISAGDDRLVKLWRMTASKAwqVDTCRGHYNNVSCCIFHPYQDLILSVSEDKTLRVWDLNRRVAVKTFRRENDRFWFI 304
           6666677********************************777777******************************************************** PP
   S: 271  avlsfgdnvlvlgsedskvniwklkknep 299
           ++ +++ n +++g  ds v+++kl++++p
   Q: 305  TC-HPKLNLFATG-HDSGVMVFKLERERP 331
           **.8888888887.589*******98876 PP

Organism

Schizosaccharomyces japonicus

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MQMLTKFESK SSRAKGIAFH PTQPWLLTSL HNGTIQLWDY RMGTLLERFD GHDGPVRGIA 60
FHPTQPLFVS GGDDYKVNVW NYKTKKLLFS LCGHMDYVRV CTFHHEYPWI LSCSDDQTIR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGTGGACG CAACCTCAAC CACACACAAC GAAGTACCGG TAGAGTGGAT TCGCAACTGA 60
ACCTCACTTT TGCCTAACAA ATCTGTCAAA ATGCAGATGC TAACAAAGTT TGAGTCCAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	51.62	0.00e+00	904.00
IUUC-Aml-001758	Ailuropoda melanoleuca	45.75	0.00e+00	1093.00
IUUC-Atr-002493	Amborella trichopoda	52.23	0.00e+00	900.00
IUUC-Apl-003385	Anas platyrhynchos	41.36	0.00e+00	797.00
IUUC-Aca-005154	Anolis carolinensis	68.60	2.00e-89	319.00
IUUC-Aly-006020	Arabidopsis lyrata	52.03	0.00e+00	895.00
IUUC-Ath-007058	Arabidopsis thaliana	44.46	0.00e+00	1040.00
IUUC-Ago-007992	Ashbya gossypii	46.10	0.00e+00	1071.00
IUUC-Acl-008027	Aspergillus clavatus	51.76	0.00e+00	1287.00
IUUC-Afl-008644	Aspergillus flavus	52.02	0.00e+00	1283.00
IUUC-Afu-008964	Aspergillus fumigatus	52.10	0.00e+00	1300.00
IUUC-Ani-009379	Aspergillus nidulans	60.55	0.00e+00	1113.00
IUUC-Ang-009756	Aspergillus niger	51.93	0.00e+00	1295.00
IUUC-Aor-010174	Aspergillus oryzae	52.02	0.00e+00	1283.00
IUUC-Ate-010302	Aspergillus terreus	52.61	0.00e+00	1326.00
IUUC-Ame-011229	Astyanax mexicanus	45.29	0.00e+00	1070.00
IUUC-Bgr-012300	Blumeria graminis	50.79	0.00e+00	1240.00
IUUC-Bta-012524	Bos taurus	45.92	0.00e+00	1085.00
IUUC-Bci-013781	Botrytis cinerea	52.42	0.00e+00	1300.00
IUUC-Bdi-014214	Brachypodium distachyon	43.36	0.00e+00	1042.00
IUUC-Bol-015925	Brassica oleracea	51.67	0.00e+00	891.00
IUUC-Bra-016978	Brassica rapa	51.20	0.00e+00	883.00
IUUC-Cel-018115	Caenorhabditis elegans	51.14	0.00e+00	870.00
IUUC-Cja-019107	Callithrix jacchus	44.74	0.00e+00	1071.00
IUUC-Cfa-020675	Canis familiaris	45.14	0.00e+00	1063.00
IUUC-Cpo-021813	Cavia porcellus	46.23	0.00e+00	1102.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	53.15	0.00e+00	928.00
IUUC-Csa-023523	Chlorocebus sabaeus	45.84	0.00e+00	1107.00
IUUC-Cho-024704	Choloepus hoffmanni	61.34	3.00e-120	424.00
IUUC-Cin-025572	Ciona intestinalis	52.40	0.00e+00	912.00
IUUC-Csv-025864	Ciona savignyi	52.40	0.00e+00	895.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	53.06	0.00e+00	1303.00
IUUC-Cne-027053	Cryptococcus neoformans	50.81	0.00e+00	1182.00
IUUC-Cme-027222	Cyanidioschyzon merolae	39.15	3.00e-138	484.00
IUUC-Dre-027421	Danio rerio	45.39	0.00e+00	1089.00
IUUC-Dno-029303	Dasypus novemcinctus	45.84	0.00e+00	1101.00
IUUC-Dor-030290	Dipodomys ordii	45.01	5.00e-139	486.00
IUUC-Dse-031543	Dothistroma septosporum	52.41	0.00e+00	1278.00
IUUC-Dme-031945	Drosophila melanogaster	52.77	0.00e+00	879.00
IUUC-Ete-032873	Echinops telfairi	44.56	0.00e+00	972.00
IUUC-Eca-033773	Equus caballus	45.63	0.00e+00	1071.00
IUUC-Eeu-034874	Erinaceus europaeus	34.21	5.00e-134	470.00
IUUC-Fca-035739	Felis catus	45.21	0.00e+00	1073.00
IUUC-Fal-037263	Ficedula albicollis	42.93	0.00e+00	967.00
IUUC-Fox-037738	Fusarium oxysporum	52.04	0.00e+00	1317.00
IUUC-Fso-038153	Fusarium solani	52.53	0.00e+00	1326.00
IUUC-Gmo-039602	Gadus morhua	42.97	0.00e+00	990.00
IUUC-Ggr-039931	Gaeumannomyces graminis	52.00	0.00e+00	1286.00
IUUC-Gga-040590	Gallus gallus	46.15	0.00e+00	1098.00
IUUC-Gac-041318	Gasterosteus aculeatus	44.92	0.00e+00	1068.00
IUUC-Gma-043585	Glycine max	44.53	0.00e+00	1064.00
IUUC-Ggo-045029	Gorilla gorilla	45.51	0.00e+00	1097.00
IUUC-Hsa-046078	Homo sapiens	45.51	0.00e+00	1097.00
IUUC-Hvu-047556	Hordeum vulgare	44.25	0.00e+00	1050.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	37.09	2.00e-157	548.00
IUUC-Kpa-049256	Komagataella pastoris	47.39	0.00e+00	1155.00
IUUC-Lch-049706	Latimeria chalumnae	45.98	0.00e+00	1092.00
IUUC-Lpe-051316	Leersia perrieri	52.47	0.00e+00	908.00
IUUC-Loc-051867	Lepisosteus oculatus	39.20	0.00e+00	716.00
IUUC-Lma-053138	Leptosphaeria maculans	52.29	0.00e+00	1315.00
IUUC-Laf-053510	Loxodonta africana	46.22	0.00e+00	1102.00
IUUC-Mcc-055836	Macaca mulatta	45.74	0.00e+00	1098.00
IUUC-Meu-056238	Macropus eugenii	49.26	0.00e+00	655.00
IUUC-Mor-057172	Magnaporthe oryzae	51.88	0.00e+00	1313.00
IUUC-Mpo-057300	Magnaporthe poae	51.96	0.00e+00	1298.00
IUUC-Mtr-058248	Medicago truncatula	44.34	0.00e+00	1055.00
IUUC-Mla-059019	Melampsora laricipopulina	51.05	0.00e+00	1253.00
IUUC-Mga-059499	Meleagris gallopavo	46.07	0.00e+00	1093.00
IUUC-Mvi-060336	Microbotryum violaceum	50.24	0.00e+00	1209.00
IUUC-Mmr-061102	Microcebus murinus	45.59	0.00e+00	1087.00
IUUC-Mdo-062594	Monodelphis domestica	46.63	0.00e+00	1113.00
IUUC-Mmu-063736	Mus musculus	45.65	0.00e+00	1093.00
IUUC-Mac-065398	Musa acuminata	42.61	0.00e+00	958.00
IUUC-Mpu-066701	Mustela putorius furo	45.99	0.00e+00	1093.00
IUUC-Mlu-067392	Myotis lucifugus	45.90	0.00e+00	1094.00
IUUC-Nfi-068270	Neosartorya fischeri	52.02	0.00e+00	1292.00
IUUC-Ncr-068892	Neurospora crassa	52.95	0.00e+00	1319.00
IUUC-Nle-069634	Nomascus leucogenys	56.63	0.00e+00	806.00
IUUC-Opr-070952	Ochotona princeps	33.99	4.00e-132	464.00
IUUC-Ont-072488	Oreochromis niloticus	45.60	0.00e+00	1074.00
IUUC-Ocu-074211	Oryctolagus cuniculus	46.00	0.00e+00	1100.00
IUUC-Oba-075761	Oryza barthii	52.23	0.00e+00	907.00
IUUC-Obr-076429	Oryza brachyantha	51.51	0.00e+00	897.00
IUUC-Ogl-077364	Oryza glaberrima	52.23	0.00e+00	907.00
IUUC-Ogu-078257	Oryza glumaepatula	52.23	0.00e+00	907.00
IUUC-Oin-079274	Oryza indica	52.11	0.00e+00	905.00
IUUC-Olo-080466	Oryza longistaminata	44.67	0.00e+00	1051.00
IUUC-Ome-081993	Oryza meridionalis	53.74	0.00e+00	860.00
IUUC-Oni-082874	Oryza nivara	52.29	0.00e+00	909.00
IUUC-Opu-083885	Oryza punctata	52.35	0.00e+00	908.00
IUUC-Oru-084274	Oryza rufipogon	52.23	0.00e+00	907.00
IUUC-Osa-085565	Oryza sativa	52.23	0.00e+00	907.00
IUUC-Ola-086921	Oryzias latipes	44.94	0.00e+00	1065.00
IUUC-Olu-087639	Ostreococcus lucimarinus	46.63	0.00e+00	1095.00
IUUC-Oga-087991	Otolemur garnettii	44.16	0.00e+00	1029.00
IUUC-Oar-089590	Ovis aries	46.00	0.00e+00	1100.00
IUUC-Ptr-090808	Pan troglodytes	45.51	0.00e+00	1097.00
IUUC-Pan-092475	Papio anubis	45.72	0.00e+00	1095.00
IUUC-Psi-093044	Pelodiscus sinensis	48.68	0.00e+00	783.00
IUUC-Pno-094839	Phaeosphaeria nodorum	52.24	0.00e+00	1269.00
IUUC-Ppa-095254	Physcomitrella patens	46.60	0.00e+00	1121.00
IUUC-Pfo-097493	Poecilia formosa	45.04	0.00e+00	1073.00
IUUC-Pab-098497	Pongo abelii	45.84	0.00e+00	1106.00
IUUC-Pop-099992	Populus trichocarpa	44.90	0.00e+00	1060.00
IUUC-Pca-100413	Procavia capensis	51.16	2.00e-169	587.00
IUUC-Ppe-101899	Prunus persica	45.10	0.00e+00	1055.00
IUUC-Pva-102126	Pteropus vampyrus	43.99	0.00e+00	1024.00
IUUC-Pgr-103376	Puccinia graminis	51.90	0.00e+00	1267.00
IUUC-Ptt-103978	Puccinia triticina	46.15	0.00e+00	1050.00
IUUC-Pte-104126	Pyrenophora teres	51.12	0.00e+00	1262.00
IUUC-Pyt-104778	Pyrenophora triticirepentis	44.60	0.00e+00	918.00
IUUC-Rno-105428	Rattus norvegicus	46.15	0.00e+00	1100.00
IUUC-Sce-106464	Saccharomyces cerevisiae	44.70	0.00e+00	1039.00
IUUC-Sha-107301	Sarcophilus harrisii	45.70	0.00e+00	1081.00
IUUC-Spo-108217	Schizosaccharomyces pombe	67.88	0.00e+00	1737.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	52.21	0.00e+00	1300.00
IUUC-Smo-109582	Selaginella moellendorffii	53.71	0.00e+00	947.00
IUUC-Sit-109697	Setaria italica	52.35	0.00e+00	907.00
IUUC-Sly-111759	Solanum lycopersicum	44.24	0.00e+00	1054.00
IUUC-Stu-112564	Solanum tuberosum	44.41	0.00e+00	1057.00
IUUC-Sar-113313	Sorex araneus	36.46	1.00e-132	465.00
IUUC-Sbi-114388	Sorghum bicolor	52.23	0.00e+00	905.00
IUUC-Sre-115209	Sporisorium reilianum	56.72	0.00e+00	1030.00
IUUC-Ssc-115933	Sus scrofa	46.00	0.00e+00	1100.00
IUUC-Tgu-117109	Taeniopygia guttata	36.12	9.00e-81	291.00
IUUC-Tru-117772	Takifugu rubripes	45.19	0.00e+00	1064.00
IUUC-Tsy-119105	Tarsius syrichta	43.76	0.00e+00	841.00
IUUC-Tni-120556	Tetraodon nigroviridis	38.87	0.00e+00	785.00
IUUC-Tca-121046	Theobroma cacao	45.41	0.00e+00	1089.00
IUUC-Tre-121951	Trichoderma reesei	52.24	0.00e+00	1278.00
IUUC-Tvi-122359	Trichoderma virens	51.80	0.00e+00	1299.00
IUUC-Tae-123611	Triticum aestivum	51.62	0.00e+00	903.00
IUUC-Tur-126754	Triticum urartu	51.62	0.00e+00	904.00
IUUC-Tme-127170	Tuber melanosporum	53.25	0.00e+00	1338.00
IUUC-Tbe-127882	Tupaia belangeri	42.19	2.00e-131	461.00
IUUC-Ttr-128217	Tursiops truncatus	44.06	0.00e+00	1030.00
IUUC-Uma-129337	Ustilago maydis	56.79	0.00e+00	1023.00
IUUC-Vda-129828	Verticillium dahliae	51.06	0.00e+00	1277.00
IUUC-Vpa-130537	Vicugna pacos	45.35	0.00e+00	1074.00
IUUC-Vvi-130958	Vitis vinifera	52.35	0.00e+00	907.00
IUUC-Xtr-132857	Xenopus tropicalis	45.55	0.00e+00	1025.00
IUUC-Xma-133138	Xiphophorus maculatus	45.04	0.00e+00	1074.00
IUUC-Yli-134399	Yarrowia lipolytica	52.74	0.00e+00	924.00
IUUC-Zma-135612	Zea mays	43.49	0.00e+00	1041.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence