iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-25	89.3	395	425

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWD 29
           H++ vt+++f   +d++++sGs Dg++++W+
   Q: 395  HNNYVTSVQFnpvDDDHFISGSIDGKVRIWS 425
           999*********766***************8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MESLIEEEEE SRFFDAHEEI ASCSSPCKIE SPSSISGEFR YDVWIKSPGN TEERREKFLK 60
WMGLSSTVNE SKSGNVYRLS SSVNESAVLM SLKSDDDEFS SSRCDSFSPS ESVDRVVNES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTTTTTCCT TCATCAAATC TACGCTTCTT TCTTTGTCTG ACAAAAAAAT ATATATCAAA 60
ATCAACTCTT TTTTTTTTTC TCTTGTTTAT TCCAGAATCT GTATACATAA CCAGAAAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

ath:AT5G24320

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000343	Aegilops tauschii	47.10	1.00e-123	436.00
IUUC-Aly-005587	Arabidopsis lyrata	90.45	0.00e+00	1214.00
IUUC-Bol-016331	Brassica oleracea	78.44	0.00e+00	1016.00
IUUC-Bra-017674	Brassica rapa	77.24	0.00e+00	965.00
IUUC-Cre-022638	Chlamydomonas reinhardtii	31.73	3.00e-19	88.20
IUUC-Gma-043517	Glycine max	47.07	3.00e-158	551.00
IUUC-Hvu-047828	Hordeum vulgare	46.71	3.00e-132	464.00
IUUC-Lpe-051594	Leersia perrieri	45.51	2.00e-99	356.00
IUUC-Mtr-057948	Medicago truncatula	56.02	1.00e-153	536.00
IUUC-Mac-064863	Musa acuminata	44.17	3.00e-147	514.00
IUUC-Oba-075653	Oryza barthii	44.87	4.00e-112	398.00
IUUC-Obr-076256	Oryza brachyantha	47.98	3.00e-119	421.00
IUUC-Ogl-077818	Oryza glaberrima	47.67	7.00e-118	417.00
IUUC-Ogu-078138	Oryza glumaepatula	45.05	2.00e-113	402.00
IUUC-Oin-079480	Oryza indica	47.67	4.00e-118	418.00
IUUC-Olo-080838	Oryza longistaminata	47.87	3.00e-119	421.00
IUUC-Ome-081177	Oryza meridionalis	47.87	3.00e-129	455.00
IUUC-Oni-082466	Oryza nivara	47.67	3.00e-118	418.00
IUUC-Opu-083616	Oryza punctata	46.32	8.00e-110	390.00
IUUC-Oru-084265	Oryza rufipogon	45.05	3.00e-113	402.00
IUUC-Osa-085283	Oryza sativa	47.67	3.00e-118	418.00
IUUC-Pop-098995	Populus trichocarpa	51.34	2.00e-176	611.00
IUUC-Ppe-101700	Prunus persica	52.03	0.00e+00	666.00
IUUC-Sit-110689	Setaria italica	50.00	1.00e-122	432.00
IUUC-Sly-111626	Solanum lycopersicum	46.76	2.00e-161	562.00
IUUC-Stu-112052	Solanum tuberosum	52.73	5.00e-147	514.00
IUUC-Sbi-114128	Sorghum bicolor	46.93	3.00e-124	438.00
IUUC-Tca-121772	Theobroma cacao	50.27	0.00e+00	638.00
IUUC-Tae-122988	Triticum aestivum	47.12	2.00e-124	439.00
IUUC-Vvi-131295	Vitis vinifera	50.64	3.00e-170	591.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence