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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006591
UUCD1 version UUC-ArT-01616
Ensembl Protein ID AT5G06600.1
UniProt Accession Q9FPT1; Q9C5K1; Q9FG10; UBP12_ARATH
Genbank Protein ID AAG42754.1; BAB11409.1; AED91039.1; AED91040.1; AAK25908.1; AAN13185.1
Protein Name Ubiquitin carboxyl-terminal hydrolase 12; Deubiquitinating enzyme 12; Ubiquitin thioesterase 12; Ubiquitin-specific-processing protease 12
Genbank Nucleotide ID AF302663; AP002543; CP002688; CP002688; AF360198; AY142616
Gene Name UBP12; At5g06600; F15M7.13
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G06600 AT5G06600.1 AT5G06600.1
AT5G06600 AT5G06600.2 AT5G06600.2
AT5G06600 AT5G06600.3 AT5G06600.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
DUB/USP USP 21388379
Classification
Family E-value Score Start End
DUB/USP 1.30e-70 239.1 199 523
ULD/UDP/UBQ/UBQ_Other 7.60e-05 23.4 593 644
Active Site
Position(s) Description Evidence
208 Nucleophile ECO:0000255|PROSITE-ProRule:PRU10092,
ECO:0000255|PROSITE-ProRule:PRU10093}
455 Proton acceptor ECO:0000255|PROSITE-ProRule:PRU10092,
ECO:0000255|PROSITE-ProRule:PRU10093}
Domain Profile

   DUB/USP
   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEflaf 98
           +GlkN+g+tCYmNS+LQ+L++ip +r+++ +     ++ ++++ p++++  +lq+lf +l ++++++v+++el+k++++    +++++q+D+qE+ ++
   Q: 199  VGLKNQGATCYMNSLLQTLYHIPYFRKAVYH-----MPTTENDAPTASIPLALQSLFYKL-QYNDTSVATKELTKSFGWDT--YDSFMQHDVQELNRV 288
           6******************************.....555555789***************.88999************877..67************* PP
   S: 99   lldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkeslqdcLesftk 196
           l ++le+++                          k +  + +i++lF+g+  + i c + d +s+r+e+f+dl+l+v+g +     ++  +++++++
   Q: 289  LCEKLEDKM--------------------------KGTVVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCK-----DVYASFDKYVE 355
           *********..........................7899*******************************************.....9********** PP
   S: 197  eeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdls....pfctspeekqkekkkYeLiavvvHsGsl 290
            e+leg+nky+ e   ++q+a+k + +  +P+vL l+LkRf+++  ++   kin+++efpleLdl+    ++++  + + ++++ Y L++v+vHsG++
   Q: 356  VERLEGDNKYHAEGH-GLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLDredgKYLSP-DADRSVRNLYTLHSVLVHSGGV 451
           ***********9985.79***********************************************9777666666.666678**************** PP
   S: 291  ssGHYvayvkn.ekgkWllfdDskVtevkeeevleetg........................staYvlfYkr 337
           ++GHY+a+++   +++W++fdD++Vt+ + ++ lee+                         s+aY+l+Y r
   Q: 452  HGGHYYAFIRPtLSDQWYKFDDERVTKEDLKRALEEQYggeeelpqtnpgfnnnppfkftkySNAYMLVYIR 523
           **********945677*************9999997779*******************************87 PP
   

   ULD/UDP/UBQ/UBQ_Other
   S: 10   gs.eltlkvnpsdtVaeLKekiekklgippeqqrLiyk....GkiLeddktL 56
           +  + ++++ ++++++++Ke++ k++g+p++ qr +++    ++  +++++L
   Q: 593  HDkVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWakrqNHTYRPNRPL 644
           44488999***************************98844442222555444 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity).
 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity).
Protein Sequence
(Fasta)
MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT 60
IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM YLDVSDAASL PYGWSRYAQF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006591|DUB,USP;ULD,UBQ_Other|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGTAAGTCTT ATACGTGCCG CTTTCTCATT GGTCTGTCTC GCTTGATAGA CCCAACCTCG 60
GAGAAATTAT AAATCTGAGC CCGTATACTG TGAAATTACA TTAATGACCC TTTAAATTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006591|DUB,USP;ULD,UBQ_Other|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
Interpro

IPR002083--MATH/TRAF_dom
IPR001394--Peptidase_C19_UCH
IPR008974--TRAF-like
IPR024729--USP7_ICP0-binding_dom
IPR029346--USP_C
IPR018200--USP_CS
IPR028889--USP_dom
PROSITE

PS50144--MATH
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
Pfam

PF00917--MATH
PF00443--UCH
PF14533--USP7_C2
PF12436--USP7_ICP0_bdg
SMART

SM00061--MATH
Gene Ontology

GO:0005829--C:cytosol
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process
KEGG ath:AT5G06600
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000761 Aegilops tauschii 75.99 0.00e+00 1690.00
IUUC-Aml-002408 Ailuropoda melanoleuca 36.33 3.00e-164 572.00
IUUC-Aca-004518 Anolis carolinensis 35.30 5.00e-158 551.00
IUUC-Aly-006427 Arabidopsis lyrata 99.19 0.00e+00 2207.00
IUUC-Ago-007849 Ashbya gossypii 33.58 3.00e-141 496.00
IUUC-Acl-008327 Aspergillus clavatus 39.07 0.00e+00 648.00
IUUC-Afl-008491 Aspergillus flavus 38.68 0.00e+00 637.00
IUUC-Afu-008804 Aspergillus fumigatus 38.28 9.00e-174 603.00
IUUC-Ani-009257 Aspergillus nidulans 30.11 5.00e-32 134.00
IUUC-Aor-009998 Aspergillus oryzae 37.93 2.00e-177 615.00
IUUC-Ate-010428 Aspergillus terreus 38.70 0.00e+00 629.00
IUUC-Ame-010903 Astyanax mexicanus 35.35 1.00e-165 577.00
IUUC-Bgr-012132 Blumeria graminis 34.65 2.00e-160 559.00
IUUC-Bta-013192 Bos taurus 36.52 4.00e-165 575.00
IUUC-Bci-013924 Botrytis cinerea 35.90 3.00e-165 575.00
IUUC-Bdi-015069 Brachypodium distachyon 81.79 0.00e+00 1807.00
IUUC-Bol-015621 Brassica oleracea 95.49 0.00e+00 2125.00
IUUC-Bra-017080 Brassica rapa 95.07 0.00e+00 2137.00
IUUC-Cel-018219 Caenorhabditis elegans 27.99 4.00e-101 362.00
IUUC-Cja-019006 Callithrix jacchus 36.39 5.00e-164 571.00
IUUC-Cfa-020361 Canis familiaris 36.33 5.00e-164 571.00
IUUC-Cpo-022320 Cavia porcellus 36.42 4.00e-164 571.00
IUUC-Cre-022708 Chlamydomonas reinhardtii 55.78 5.00e-144 503.00
IUUC-Csa-024050 Chlorocebus sabaeus 35.59 1.00e-164 573.00
IUUC-Cho-024434 Choloepus hoffmanni 31.45 2.00e-86 313.00
IUUC-Cin-025689 Ciona intestinalis 34.65 5.00e-154 538.00
IUUC-Cgl-026650 Colletotrichum gloeosporioides 37.02 2.00e-176 612.00
IUUC-Cne-026968 Cryptococcus neoformans 41.99 0.00e+00 736.00
IUUC-Cme-027103 Cyanidioschyzon merolae 38.58 8.00e-129 454.00
IUUC-Dre-028510 Danio rerio 35.43 7.00e-166 577.00
IUUC-Dor-030611 Dipodomys ordii 50.46 2.00e-83 303.00
IUUC-Dse-031433 Dothistroma septosporum 35.74 2.00e-171 596.00
IUUC-Dme-031583 Drosophila melanogaster 34.71 1.00e-159 557.00
IUUC-Ete-033191 Echinops telfairi 35.81 6.00e-159 554.00
IUUC-Eca-034122 Equus caballus 36.33 5.00e-164 571.00
IUUC-Fca-036377 Felis catus 36.24 2.00e-163 569.00
IUUC-Fal-036964 Ficedula albicollis 36.52 6.00e-170 590.00
IUUC-Fso-038084 Fusarium solani 35.77 1.00e-172 600.00
IUUC-Gmo-038644 Gadus morhua 34.98 2.00e-167 582.00
IUUC-Ggr-040029 Gaeumannomyces graminis 35.76 6.00e-171 594.00
IUUC-Gga-040944 Gallus gallus 36.52 1.00e-169 590.00
IUUC-Gma-043081 Glycine max 83.04 0.00e+00 1858.00
IUUC-Ggo-044947 Gorilla gorilla 36.33 5.00e-164 571.00
IUUC-Hsa-046278 Homo sapiens 35.65 1.00e-164 573.00
IUUC-Hvu-047749 Hordeum vulgare 81.45 0.00e+00 1523.00
IUUC-Itr-047904 Ictidomys tridecemlineatus 37.56 4.00e-153 535.00
IUUC-Kpa-049121 Komagataella pastoris 32.11 6.00e-134 471.00
IUUC-Lch-049847 Latimeria chalumnae 35.68 1.00e-168 586.00
IUUC-Lpe-051543 Leersia perrieri 79.93 0.00e+00 1742.00
IUUC-Lma-053169 Leptosphaeria maculans 37.53 2.00e-177 616.00
IUUC-Laf-053566 Loxodonta africana 36.42 3.00e-164 572.00
IUUC-Mcc-055549 Macaca mulatta 36.33 4.00e-164 571.00
IUUC-Meu-056887 Macropus eugenii 28.86 2.00e-66 247.00
IUUC-Mor-057149 Magnaporthe oryzae 35.29 1.00e-167 583.00
IUUC-Mtr-058583 Medicago truncatula 82.60 0.00e+00 1851.00
IUUC-Mla-058899 Melampsora laricipopulina 39.22 0.00e+00 691.00
IUUC-Mvi-060207 Microbotryum violaceum 38.28 0.00e+00 679.00
IUUC-Mmr-060946 Microcebus murinus 35.59 1.00e-164 573.00
IUUC-Mdo-062079 Monodelphis domestica 36.56 4.00e-148 518.00
IUUC-Mmu-063678 Mus musculus 36.52 1.00e-163 570.00
IUUC-Mpu-066744 Mustela putorius furo 36.33 6.00e-164 571.00
IUUC-Mlu-067949 Myotis lucifugus 36.37 7.00e-163 567.00
IUUC-Nfi-068342 Neosartorya fischeri 38.96 3.00e-176 612.00
IUUC-Ncr-068818 Neurospora crassa 37.41 0.00e+00 632.00
IUUC-Nle-070064 Nomascus leucogenys 35.65 1.00e-164 573.00
IUUC-Ont-072095 Oreochromis niloticus 35.11 3.00e-166 578.00
IUUC-Oan-073483 Ornithorhynchus anatinus 36.24 1.00e-162 566.00
IUUC-Ocu-073967 Oryctolagus cuniculus 36.42 2.00e-159 556.00
IUUC-Oba-075823 Oryza barthii 78.40 0.00e+00 1710.00
IUUC-Obr-076514 Oryza brachyantha 82.90 0.00e+00 1805.00
IUUC-Ogl-077131 Oryza glaberrima 82.88 0.00e+00 1793.00
IUUC-Ogu-078038 Oryza glumaepatula 77.12 0.00e+00 1736.00
IUUC-Oin-079574 Oryza indica 77.35 0.00e+00 1738.00
IUUC-Olo-081067 Oryza longistaminata 78.96 0.00e+00 1662.00
IUUC-Ome-081879 Oryza meridionalis 82.08 0.00e+00 1788.00
IUUC-Oni-082461 Oryza nivara 79.09 0.00e+00 1757.00
IUUC-Opu-083199 Oryza punctata 81.35 0.00e+00 1748.00
IUUC-Oru-085109 Oryza rufipogon 80.27 0.00e+00 1724.00
IUUC-Ola-086640 Oryzias latipes 35.15 4.00e-167 581.00
IUUC-Olu-087874 Ostreococcus lucimarinus 45.25 0.00e+00 907.00
IUUC-Oga-089059 Otolemur garnettii 34.10 2.00e-141 496.00
IUUC-Ptr-091334 Pan troglodytes 36.33 5.00e-164 571.00
IUUC-Pan-091717 Papio anubis 36.33 4.00e-164 571.00
IUUC-Psi-093933 Pelodiscus sinensis 35.53 2.00e-168 585.00
IUUC-Pma-094648 Petromyzon marinus 37.78 2.00e-159 556.00
IUUC-Pno-095020 Phaeosphaeria nodorum 37.48 1.00e-166 580.00
IUUC-Ppa-095922 Physcomitrella patens 79.02 0.00e+00 1774.00
IUUC-Pfo-096181 Poecilia formosa 35.20 1.00e-165 577.00
IUUC-Pop-100083 Populus trichocarpa 86.94 0.00e+00 1941.00
IUUC-Ppe-101523 Prunus persica 86.94 0.00e+00 1912.00
IUUC-Pva-102472 Pteropus vampyrus 36.79 2.00e-160 559.00
IUUC-Pgr-103463 Puccinia graminis 39.34 0.00e+00 690.00
IUUC-Ptt-103716 Puccinia triticina 39.20 0.00e+00 639.00
IUUC-Pte-104360 Pyrenophora teres 38.26 3.00e-174 605.00
IUUC-Pyt-104581 Pyrenophora triticirepentis 37.34 1.00e-174 607.00
IUUC-Rno-105816 Rattus norvegicus 35.68 6.00e-165 574.00
IUUC-Sce-106230 Saccharomyces cerevisiae 33.82 1.00e-128 454.00
IUUC-Sha-107439 Sarcophilus harrisii 36.42 7.00e-164 570.00
IUUC-Sja-107690 Schizosaccharomyces japonicus 35.51 2.00e-151 529.00
IUUC-Spo-108019 Schizosaccharomyces pombe 36.74 3.00e-154 538.00
IUUC-Smo-109308 Selaginella moellendorffii 78.73 0.00e+00 1751.00
IUUC-Sit-110268 Setaria italica 82.10 0.00e+00 1790.00
IUUC-Sly-111774 Solanum lycopersicum 82.61 0.00e+00 1862.00
IUUC-Stu-112387 Solanum tuberosum 82.79 0.00e+00 1868.00
IUUC-Sar-113685 Sorex araneus 35.99 9.00e-160 557.00
IUUC-Sbi-114424 Sorghum bicolor 82.10 0.00e+00 1808.00
IUUC-Ssc-116297 Sus scrofa 35.59 2.00e-164 572.00
IUUC-Tgu-116767 Taeniopygia guttata 35.71 4.00e-169 588.00
IUUC-Tni-119890 Tetraodon nigroviridis 35.68 1.00e-163 570.00
IUUC-Tca-121501 Theobroma cacao 87.58 0.00e+00 1949.00
IUUC-Tre-122169 Trichoderma reesei 35.79 2.00e-168 585.00
IUUC-Tvi-122600 Trichoderma virens 36.76 9.00e-174 603.00
IUUC-Tae-123032 Triticum aestivum 81.18 0.00e+00 1818.00
IUUC-Tur-126501 Triticum urartu 72.49 0.00e+00 1577.00
IUUC-Tme-127045 Tuber melanosporum 37.48 1.00e-178 619.00
IUUC-Ttr-129161 Tursiops truncatus 35.76 5.00e-163 568.00
IUUC-Vpa-130141 Vicugna pacos 36.08 2.00e-54 207.00
IUUC-Vvi-131308 Vitis vinifera 86.15 0.00e+00 1919.00
IUUC-Xma-133949 Xiphophorus maculatus 35.35 6.00e-165 574.00
IUUC-Yli-134527 Yarrowia lipolytica 34.16 3.00e-152 532.00
Created Date 25-Jun-2017

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