iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049221

Ensembl Protein ID

CAY68097

UniProt Accession

C4QXX4; C4QXX4_KOMPG

Genbank Protein ID

CAY68097.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

FN392319

Gene Name

ERB1; PAS_chr1-4_0664

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr1-4_0664	CAY68097	CAY68097

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.40e-12	43.0	450	486

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtl.lvsGsdDgtikvWDlrtgvl 35
           gH++++++l+  ++++ l++G+dDgt++vW++ +g+ 
   Q: 450  GHSGRIRALSVhPSGIwLATGADDGTVRVWEVVSGRE 486
           8********998553348**************99985 PP

Organism

Komagataella pastoris

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MVTRSANKRT ESARSKNEKK RAHEEPSPED VVELDSSEEE FDLDGLIDEG SDDEGEEDDA 60
DEHQEEPDEN DKEDTGLEAD EEPELESDSD VELNKMLAQE EGDDESSESD APSEPQEETS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTAACAC GTTCAGCAAA CAAGCGGACG GAATCAGCAA GATCCAAAAA TGAGAAGAAG 60
CGTGCTCATG AAGAACCTTC TCCAGAGGAT GTTGTGGAAC TAGATTCCTC GGAAGAGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppa:PAS_chr1-4_0664

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	38.31	2.00e-103	368.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.06	1.00e-131	461.00
IUUC-Atr-003141	Amborella trichopoda	34.62	2.00e-66	244.00
IUUC-Apl-003545	Anas platyrhynchos	39.44	4.00e-122	429.00
IUUC-Aly-005649	Arabidopsis lyrata	39.48	3.00e-130	456.00
IUUC-Ath-007625	Arabidopsis thaliana	39.32	2.00e-124	437.00
IUUC-Ago-007958	Ashbya gossypii	61.48	0.00e+00	960.00
IUUC-Acl-008344	Aspergillus clavatus	50.36	0.00e+00	645.00
IUUC-Afl-008616	Aspergillus flavus	51.16	0.00e+00	669.00
IUUC-Afu-009083	Aspergillus fumigatus	50.14	0.00e+00	628.00
IUUC-Ani-009365	Aspergillus nidulans	49.93	0.00e+00	662.00
IUUC-Ang-009796	Aspergillus niger	49.25	0.00e+00	662.00
IUUC-Aor-010015	Aspergillus oryzae	51.16	0.00e+00	668.00
IUUC-Ate-010537	Aspergillus terreus	50.87	0.00e+00	679.00
IUUC-Ame-011767	Astyanax mexicanus	45.63	1.00e-68	250.00
IUUC-Bgr-012286	Blumeria graminis	49.33	0.00e+00	672.00
IUUC-Bta-013569	Bos taurus	41.29	1.00e-141	494.00
IUUC-Bci-013820	Botrytis cinerea	51.26	0.00e+00	659.00
IUUC-Bdi-014477	Brachypodium distachyon	40.22	2.00e-129	454.00
IUUC-Bol-016099	Brassica oleracea	40.28	9.00e-129	451.00
IUUC-Bra-017174	Brassica rapa	40.28	4.00e-129	454.00
IUUC-Cel-018201	Caenorhabditis elegans	37.39	3.00e-113	400.00
IUUC-Cja-019009	Callithrix jacchus	43.17	3.00e-87	313.00
IUUC-Cfa-020173	Canis familiaris	39.73	8.00e-135	472.00
IUUC-Cpo-021796	Cavia porcellus	42.92	8.00e-146	508.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	40.26	2.00e-73	268.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.33	1.00e-150	525.00
IUUC-Cho-025105	Choloepus hoffmanni	32.95	2.00e-07	48.50
IUUC-Cin-025782	Ciona intestinalis	42.47	5.00e-149	519.00
IUUC-Csv-026352	Ciona savignyi	40.48	2.00e-145	507.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	43.05	1.00e-148	517.00
IUUC-Cne-027004	Cryptococcus neoformans	44.86	3.00e-176	609.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.29	3.00e-118	417.00
IUUC-Dre-028658	Danio rerio	41.94	2.00e-153	534.00
IUUC-Dno-028883	Dasypus novemcinctus	42.48	3.00e-146	509.00
IUUC-Dor-031031	Dipodomys ordii	41.35	6.00e-149	518.00
IUUC-Dse-031443	Dothistroma septosporum	44.95	8.00e-179	618.00
IUUC-Dme-031786	Drosophila melanogaster	41.85	1.00e-154	537.00
IUUC-Eca-033677	Equus caballus	42.18	4.00e-145	506.00
IUUC-Eeu-035310	Erinaceus europaeus	37.59	3.00e-106	376.00
IUUC-Fca-035888	Felis catus	42.48	3.00e-151	526.00
IUUC-Fal-037438	Ficedula albicollis	41.46	4.00e-119	419.00
IUUC-Fox-037973	Fusarium oxysporum	49.19	0.00e+00	667.00
IUUC-Fso-038187	Fusarium solani	49.19	0.00e+00	666.00
IUUC-Gmo-039114	Gadus morhua	40.55	3.00e-136	476.00
IUUC-Ggr-039746	Gaeumannomyces graminis	49.56	0.00e+00	694.00
IUUC-Gga-040631	Gallus gallus	43.82	2.00e-89	320.00
IUUC-Gac-042582	Gasterosteus aculeatus	39.91	3.00e-142	496.00
IUUC-Gma-044215	Glycine max	39.49	1.00e-130	457.00
IUUC-Ggo-045587	Gorilla gorilla	42.18	4.00e-150	522.00
IUUC-Hsa-046319	Homo sapiens	42.18	2.00e-150	523.00
IUUC-Hvu-047526	Hordeum vulgare	40.00	7.00e-121	425.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	42.37	4.00e-147	513.00
IUUC-Lch-049640	Latimeria chalumnae	43.50	2.00e-164	570.00
IUUC-Lpe-051135	Leersia perrieri	40.35	2.00e-65	241.00
IUUC-Loc-051930	Lepisosteus oculatus	42.84	6.00e-160	555.00
IUUC-Lma-053290	Leptosphaeria maculans	49.26	0.00e+00	654.00
IUUC-Laf-053903	Loxodonta africana	39.57	1.00e-125	441.00
IUUC-Mcc-055471	Macaca mulatta	42.33	2.00e-150	523.00
IUUC-Meu-056190	Macropus eugenii	42.99	2.00e-147	514.00
IUUC-Mor-057135	Magnaporthe oryzae	49.93	0.00e+00	665.00
IUUC-Mpo-057475	Magnaporthe poae	48.97	0.00e+00	654.00
IUUC-Mtr-058689	Medicago truncatula	36.69	1.00e-113	402.00
IUUC-Mla-059149	Melampsora laricipopulina	44.90	3.00e-171	592.00
IUUC-Mga-059645	Meleagris gallopavo	36.00	3.00e-48	182.00
IUUC-Mvi-060485	Microbotryum violaceum	44.97	1.00e-160	559.00
IUUC-Mmr-061674	Microcebus murinus	41.96	2.00e-145	507.00
IUUC-Mdo-062973	Monodelphis domestica	43.61	9.00e-155	538.00
IUUC-Mmu-064180	Mus musculus	42.88	2.00e-148	517.00
IUUC-Mac-064535	Musa acuminata	36.11	7.00e-76	276.00
IUUC-Mpu-066406	Mustela putorius furo	42.53	4.00e-151	526.00
IUUC-Mlu-067795	Myotis lucifugus	41.65	6.00e-138	482.00
IUUC-Nfi-068516	Neosartorya fischeri	50.14	2.00e-173	600.00
IUUC-Ncr-068767	Neurospora crassa	49.86	0.00e+00	639.00
IUUC-Opr-071084	Ochotona princeps	41.26	2.00e-53	201.00
IUUC-Ont-071614	Oreochromis niloticus	42.51	1.00e-156	544.00
IUUC-Oba-075980	Oryza barthii	40.63	5.00e-66	243.00
IUUC-Obr-076799	Oryza brachyantha	40.06	4.00e-125	439.00
IUUC-Ogl-077134	Oryza glaberrima	40.06	9.00e-120	422.00
IUUC-Ogu-078655	Oryza glumaepatula	38.52	3.00e-114	403.00
IUUC-Oin-079654	Oryza indica	40.06	1.00e-119	421.00
IUUC-Olo-080706	Oryza longistaminata	40.35	1.00e-65	241.00
IUUC-Ome-081716	Oryza meridionalis	40.06	4.00e-65	240.00
IUUC-Oni-082508	Oryza nivara	38.21	3.00e-113	400.00
IUUC-Opu-083707	Oryza punctata	40.35	2.00e-65	241.00
IUUC-Oru-084453	Oryza rufipogon	40.35	1.00e-65	241.00
IUUC-Osa-085811	Oryza sativa	40.06	7.00e-120	422.00
IUUC-Ola-087361	Oryzias latipes	44.34	2.00e-159	553.00
IUUC-Oga-088015	Otolemur garnettii	41.38	7.00e-152	528.00
IUUC-Oar-090058	Ovis aries	52.38	1.00e-50	191.00
IUUC-Ptr-090631	Pan troglodytes	38.72	1.00e-59	221.00
IUUC-Pan-092306	Papio anubis	42.27	5.00e-149	519.00
IUUC-Pma-094622	Petromyzon marinus	43.38	2.00e-162	563.00
IUUC-Pno-094794	Phaeosphaeria nodorum	45.87	6.00e-180	622.00
IUUC-Ppa-095528	Physcomitrella patens	36.52	8.00e-77	279.00
IUUC-Pfo-096682	Poecilia formosa	41.99	9.00e-159	551.00
IUUC-Pab-097939	Pongo abelii	41.90	7.00e-135	471.00
IUUC-Pop-099530	Populus trichocarpa	40.64	6.00e-117	412.00
IUUC-Pca-100333	Procavia capensis	41.10	5.00e-144	502.00
IUUC-Ppe-102078	Prunus persica	36.72	5.00e-121	426.00
IUUC-Pgr-103525	Puccinia graminis	44.26	1.00e-159	555.00
IUUC-Ptt-103929	Puccinia triticina	44.79	4.00e-155	540.00
IUUC-Pte-104029	Pyrenophora teres	48.45	0.00e+00	694.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	48.75	0.00e+00	696.00
IUUC-Rno-105248	Rattus norvegicus	43.47	9.00e-150	521.00
IUUC-Sce-106381	Saccharomyces cerevisiae	63.41	0.00e+00	927.00
IUUC-Sha-106519	Sarcophilus harrisii	43.64	2.00e-155	540.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	45.51	9.00e-169	585.00
IUUC-Spo-108071	Schizosaccharomyces pombe	45.93	5.00e-165	572.00
IUUC-Smo-109604	Selaginella moellendorffii	40.18	1.00e-119	422.00
IUUC-Sit-109742	Setaria italica	40.52	7.00e-130	455.00
IUUC-Sly-110970	Solanum lycopersicum	40.57	3.00e-66	243.00
IUUC-Stu-112593	Solanum tuberosum	39.02	3.00e-127	446.00
IUUC-Sar-113123	Sorex araneus	48.95	5.00e-64	235.00
IUUC-Sbi-113945	Sorghum bicolor	40.83	3.00e-127	447.00
IUUC-Sre-115188	Sporisorium reilianum	40.72	3.00e-161	560.00
IUUC-Ssc-115352	Sus scrofa	41.72	5.00e-148	515.00
IUUC-Tru-117685	Takifugu rubripes	43.85	6.00e-160	555.00
IUUC-Tni-119982	Tetraodon nigroviridis	43.01	4.00e-154	536.00
IUUC-Tca-121664	Theobroma cacao	38.88	1.00e-130	457.00
IUUC-Tre-122229	Trichoderma reesei	49.26	2.00e-174	603.00
IUUC-Tvi-122576	Trichoderma virens	49.41	3.00e-174	603.00
IUUC-Tae-124110	Triticum aestivum	38.91	9.00e-114	402.00
IUUC-Tur-126781	Triticum urartu	37.82	1.00e-99	355.00
IUUC-Tme-127080	Tuber melanosporum	55.86	0.00e+00	780.00
IUUC-Ttr-128514	Tursiops truncatus	36.97	4.00e-87	313.00
IUUC-Uma-129556	Ustilago maydis	40.00	3.00e-157	546.00
IUUC-Vda-129715	Verticillium dahliae	50.87	0.00e+00	679.00
IUUC-Vvi-131211	Vitis vinifera	38.85	2.00e-119	420.00
IUUC-Xma-133883	Xiphophorus maculatus	42.45	3.00e-155	540.00
IUUC-Yli-134438	Yarrowia lipolytica	57.37	0.00e+00	806.00
IUUC-Zma-135341	Zea mays	37.06	4.00e-116	410.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence