iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pgr-103590

Ensembl Protein ID

EFP78498

UniProt Accession

E3K2C9; E3K2C9_PUCGT

Genbank Protein ID

EFP78498.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

DS178270

Gene Name

PGTG_04454

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGTG_04454	EFP78498	EFP78498

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-31	107.1	96	126
UBD/Beta-Prp	4.20e-67	226.1	13	293

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d ++cla  ++ +l+++GsdD tik+WD+
   Q: 96   HPDYIRCLAVhPTqPLVLTGSDDMTIKLWDW 126
           99********9888****************7 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           ++++++v+f+p +++l++g ++g++ vw ++tg ll+++   e +v++ +f+ +++++v gs+D +++v++++t+  v ++++h d++++l+++p++  ++
   Q: 13   SERVKSVDFHPTEPWLLAGLYSGKVFVWHTETGALLKTFTPTEVPVRCARFIARKNWFVCGSDDFHLRVFNYNTSARVAAFEAHPDYIRCLAVHPTQPLVL 113
           67899************************************************************************************************ PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklwd 208
           +Gs+d ti++wd+++ ++  ++++gh++ ++ ++++p++ n ++s++lDrtv++W+l + +   tl   h++ v+ +++ + g  ++lv+ ++d+ +k+wd
   Q: 114  TGSDDMTIKLWDWDKSWKCLQVFEGHTHYIMNLAFNPKDsNTFASSCLDRTVKVWSLGSHTANFTLDA-HEKGVNYVEYYHGGdkPYLVTTGDDRLIKIWD 213
           **************9987777*********************************************98.*********9988888**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskv 289
           + +++c++tl+gh++nv+   f+p   +++sgs+Dg+++iW + +  l +tl++  ++ ++v++ + ++n + lg ++++v
   Q: 214  YLSKSCIQTLEGHQSNVSYAIFHPSLPIIISGSEDGTVKIWHSSTYRLENTLNYGLERAWCVTY-GKKGNDIGLGFDEGSV 293
           ***************************************************************9.7777777666555544 PP

Organism

Puccinia graminis

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MLLDITRKLL TRSERVKSVD FHPTEPWLLA GLYSGKVFVW HTETGALLKT FTPTEVPVRC 60
ARFIARKNWF VCGSDDFHLR VFNYNTSARV AAFEAHPDYI RCLAVHPTQP LVLTGSDDMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGCTAG ATATCACTCG AAAGCTTCTC ACACGCTCTG GTCGGTCTTC GCTCTCGATC 60
GGCATTCGCT TTTTGTGCAA TCGTGCAGCT TGTCCTCTGA CTGAATTGCC TCCTCTGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

pgr:PGTG_04454

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007630	Arabidopsis thaliana	52.59	0.00e+00	901.00
IUUC-Ago-007914	Ashbya gossypii	47.97	0.00e+00	780.00
IUUC-Ani-009135	Aspergillus nidulans	58.32	0.00e+00	977.00
IUUC-Ang-009654	Aspergillus niger	61.95	0.00e+00	890.00
IUUC-Aor-009939	Aspergillus oryzae	58.69	0.00e+00	1022.00
IUUC-Bta-013579	Bos taurus	54.25	0.00e+00	843.00
IUUC-Bci-013866	Botrytis cinerea	58.04	0.00e+00	958.00
IUUC-Csa-023383	Chlorocebus sabaeus	58.30	0.00e+00	738.00
IUUC-Dor-030462	Dipodomys ordii	52.94	0.00e+00	751.00
IUUC-Fal-037202	Ficedula albicollis	53.15	0.00e+00	899.00
IUUC-Fox-037711	Fusarium oxysporum	57.53	0.00e+00	899.00
IUUC-Fso-038268	Fusarium solani	57.14	0.00e+00	893.00
IUUC-Ggr-039863	Gaeumannomyces graminis	57.65	0.00e+00	924.00
IUUC-Ggo-044984	Gorilla gorilla	54.31	0.00e+00	941.00
IUUC-Hvu-047669	Hordeum vulgare	59.49	2.00e-136	476.00
IUUC-Kpa-049265	Komagataella pastoris	51.08	0.00e+00	905.00
IUUC-Lma-053218	Leptosphaeria maculans	55.07	0.00e+00	937.00
IUUC-Mor-057264	Magnaporthe oryzae	57.77	0.00e+00	914.00
IUUC-Mlu-067059	Myotis lucifugus	53.93	0.00e+00	918.00
IUUC-Olu-087655	Ostreococcus lucimarinus	53.02	0.00e+00	902.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.66	4.00e-108	383.00
IUUC-Pte-104274	Pyrenophora teres	56.33	0.00e+00	969.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	55.77	0.00e+00	920.00
IUUC-Rno-105979	Rattus norvegicus	48.03	0.00e+00	711.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	49.87	0.00e+00	847.00
IUUC-Smo-108828	Selaginella moellendorffii	51.41	0.00e+00	901.00
IUUC-Tsy-118824	Tarsius syrichta	51.67	0.00e+00	692.00
IUUC-Tre-122072	Trichoderma reesei	56.36	0.00e+00	948.00
IUUC-Tvi-122546	Trichoderma virens	55.93	0.00e+00	944.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence