iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099696

Ensembl Protein ID

POPTR_0005s05890.1

UniProt Accession

U5GEB9; U5GEB9_POPTR

Genbank Protein ID

ERP60631.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_595386; POPTR_0005s05890g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s05890	POPTR_0005s05890.1	POPTR_0005s05890.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-26	92.6	341	375

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H++ vtc++f   d ++++sGs Dg++++W +++ 
   Q: 341  HSNYVTCIQFnpVDkNYFISGSIDGKVRIWGVSEK 375
           99*********9778***************98765 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MLSSDEGKRD LFYDSVDYFD LGCDQLEYDI WLTEPQSVEE RRQGFLRGMG LDGFAFKRHE 60
NTGLERITEC SGAVSSSSVP CTNVEEVNVV SCSAGREENS EANCVIDQMS KDKMDKSDVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTGTAGCT AAAACAACAG CCAACACTAG TTTTCTTGTT TATTGGACCT AGCAGCCACT 60
CGTGTTTGAT GCTCGTGCGC TTGCAAAATA AAGTAAAGAT TTAGACTTCT TTTCATTCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0005s05890g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001059	Aegilops tauschii	40.44	9.00e-128	450.00
IUUC-Bdi-014701	Brachypodium distachyon	40.09	5.00e-126	444.00
IUUC-Dse-031178	Dothistroma septosporum	34.39	2.00e-55	210.00
IUUC-Gma-043677	Glycine max	49.35	0.00e+00	629.00
IUUC-Hvu-047751	Hordeum vulgare	41.53	2.00e-137	482.00
IUUC-Lpe-051471	Leersia perrieri	40.92	3.00e-129	455.00
IUUC-Lma-053232	Leptosphaeria maculans	35.51	5.00e-58	219.00
IUUC-Mtr-057957	Medicago truncatula	48.77	1.00e-155	542.00
IUUC-Mac-064487	Musa acuminata	43.00	1.00e-140	493.00
IUUC-Oba-075261	Oryza barthii	41.12	3.00e-118	418.00
IUUC-Obr-076501	Oryza brachyantha	40.06	1.00e-123	436.00
IUUC-Ogl-077292	Oryza glaberrima	41.12	3.00e-118	418.00
IUUC-Ogu-079011	Oryza glumaepatula	41.27	6.00e-119	421.00
IUUC-Oin-079603	Oryza indica	41.27	8.00e-119	420.00
IUUC-Olo-080221	Oryza longistaminata	40.44	1.00e-118	419.00
IUUC-Ome-081846	Oryza meridionalis	40.41	3.00e-114	405.00
IUUC-Oni-082883	Oryza nivara	41.27	8.00e-119	420.00
IUUC-Opu-083467	Oryza punctata	39.26	4.00e-119	421.00
IUUC-Oru-084692	Oryza rufipogon	41.27	7.00e-119	420.00
IUUC-Osa-085979	Oryza sativa	41.42	2.00e-119	422.00
IUUC-Ppe-101967	Prunus persica	52.52	0.00e+00	658.00
IUUC-Pte-104369	Pyrenophora teres	35.63	2.00e-57	216.00
IUUC-Pyt-104811	Pyrenophora triticirepentis	35.14	3.00e-57	216.00
IUUC-Sit-110631	Setaria italica	41.49	2.00e-131	462.00
IUUC-Sly-110854	Solanum lycopersicum	44.96	4.00e-147	514.00
IUUC-Stu-112569	Solanum tuberosum	46.04	9.00e-152	530.00
IUUC-Sbi-114736	Sorghum bicolor	47.88	3.00e-121	428.00
IUUC-Tca-121743	Theobroma cacao	55.70	0.00e+00	668.00
IUUC-Tae-124128	Triticum aestivum	41.19	4.00e-136	478.00
IUUC-Vvi-131098	Vitis vinifera	59.15	0.00e+00	697.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence