iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016796

Ensembl Protein ID

Bra002005.1-P

UniProt Accession

M4CCS4; M4CCS4_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra002005	Bra002005.1	Bra002005.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E2/UBC	2.60e-24	86.6	1416	1547

Active Site

Position(s)	Description	Evidence
1496	Glycyl thioester intermediate	{ECO:0000256\|PROSITE-ProRule:PRU00388}

Domain Profile

E2/UBC

   S: 3    kkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltk..ifhPnvyenGkvClsilk.....ee 89
            ++ k l+++ p+gi++++ ++  ++ ++++i G  +tpY++g+F +++++p+dYP+ PP+  + +   +++Pn+ye+GkvCls+l+      +
   Q: 1416 DQDWKILQNNLPDGIFVRVYED-RMDLLRAVIAGAYGTPYQDGLFFFDFHLPPDYPSVPPSAYYHSGgwRLNPNLYEEGKVCLSLLNtwtgrGN 1508
           689999****************.5******************************************99999***************77777789 PP
   S: 90   ekWsp.alsvesvllsiqsll..aepnpesplneeaael 125
           e W p  +s+ +vl+s+q l+  ++p+++++ ++++  +
   Q: 1509 EVWDPkSSSILQVLVSLQGLVlnSKPYFNEAGYDRQIGT 1547
           *****7789***********98888****9998887644 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MDFDEYEYLE KTVENPHLEN NEVENGGGDE KPKSEVKERS RSSRHRNDED EDGRRSKRSR 60
SHHRSRSRDR ERDRHRSSRD HRDRERGGRD REKDRDKEER NGREREGGKD KDRDGKVRDH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTTTG ATGAGTATGA GTACTTAGAG AAGACCGTTG AGAATCCTCA CCTGGAGAAC 60
AACGAAGTCG AAAATGGTGG GGGTGATGAG AAACCCAAAT CTGAAGTGAA AGAGCGGAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0694--RNA-binding

Interpro

IPR012677--Nucleotide-bd_a/b_plait
IPR029123--RBM39_linker
IPR006509--RBM39_SF
IPR000504--RRM_dom
IPR003954--RRM_dom_euk
IPR000608--UBQ-conjugat_E2
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS50102--RRM
PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF15519--RBM39linker
PF00076--RRM_1
PF00179--UQ_con

SMART

SM00360--RRM
SM00361--RRM_1

Gene Ontology

GO:0005634--C:nucleus
GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0006397--P:mRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000597	Aegilops tauschii	51.20	0.00e+00	909.00
IUUC-Aml-001463	Ailuropoda melanoleuca	45.16	4.00e-56	213.00
IUUC-Atr-002469	Amborella trichopoda	54.94	0.00e+00	724.00
IUUC-Apl-004084	Anas platyrhynchos	47.66	7.00e-55	209.00
IUUC-Aca-004435	Anolis carolinensis	46.48	1.00e-53	204.00
IUUC-Aly-005970	Arabidopsis lyrata	77.40	0.00e+00	1588.00
IUUC-Ath-007320	Arabidopsis thaliana	77.89	0.00e+00	1603.00
IUUC-Acl-008031	Aspergillus clavatus	46.07	4.00e-43	170.00
IUUC-Afu-009040	Aspergillus fumigatus	40.00	7.00e-43	169.00
IUUC-Ang-009816	Aspergillus niger	42.00	8.00e-43	169.00
IUUC-Aor-010121	Aspergillus oryzae	47.95	2.00e-37	150.00
IUUC-Ame-010604	Astyanax mexicanus	45.75	8.00e-52	199.00
IUUC-Bta-013234	Bos taurus	30.41	6.00e-66	246.00
IUUC-Bdi-015067	Brachypodium distachyon	50.60	0.00e+00	858.00
IUUC-Bol-015667	Brassica oleracea	91.50	0.00e+00	1778.00
IUUC-Cja-018812	Callithrix jacchus	44.70	9.00e-55	209.00
IUUC-Cfa-020448	Canis familiaris	45.16	5.00e-56	213.00
IUUC-Cpo-021316	Cavia porcellus	42.51	7.00e-56	213.00
IUUC-Csa-023869	Chlorocebus sabaeus	44.70	1.00e-54	208.00
IUUC-Cin-025614	Ciona intestinalis	24.14	1.00e-12	67.40
IUUC-Dre-028814	Danio rerio	45.07	1.00e-52	201.00
IUUC-Dor-030644	Dipodomys ordii	36.04	2.00e-37	151.00
IUUC-Dse-031508	Dothistroma septosporum	45.36	3.00e-43	170.00
IUUC-Dme-032211	Drosophila melanogaster	39.34	4.00e-52	200.00
IUUC-Eca-033413	Equus caballus	44.75	2.00e-54	207.00
IUUC-Eeu-035035	Erinaceus europaeus	47.21	7.00e-51	196.00
IUUC-Fca-035610	Felis catus	45.16	2.00e-55	211.00
IUUC-Gmo-039262	Gadus morhua	41.40	1.00e-54	208.00
IUUC-Gga-040958	Gallus gallus	47.89	6.00e-56	213.00
IUUC-Gac-041730	Gasterosteus aculeatus	46.01	1.00e-52	202.00
IUUC-Gma-042690	Glycine max	61.07	0.00e+00	1201.00
IUUC-Ggo-045316	Gorilla gorilla	44.70	1.00e-54	208.00
IUUC-Hsa-046126	Homo sapiens	44.70	1.00e-54	208.00
IUUC-Hvu-047713	Hordeum vulgare	50.75	0.00e+00	894.00
IUUC-Itr-048048	Ictidomys tridecemlineatus	44.75	4.00e-54	206.00
IUUC-Lch-050531	Latimeria chalumnae	47.66	2.00e-55	211.00
IUUC-Lpe-051587	Leersia perrieri	49.75	0.00e+00	872.00
IUUC-Loc-052209	Lepisosteus oculatus	45.54	6.00e-52	199.00
IUUC-Lma-053064	Leptosphaeria maculans	39.41	1.00e-30	128.00
IUUC-Mcc-055722	Macaca mulatta	44.70	1.00e-54	208.00
IUUC-Meu-056834	Macropus eugenii	45.12	1.00e-54	208.00
IUUC-Mtr-057804	Medicago truncatula	62.82	0.00e+00	1127.00
IUUC-Mga-059571	Meleagris gallopavo	47.42	4.00e-55	209.00
IUUC-Mvi-060389	Microbotryum violaceum	40.43	3.00e-49	190.00
IUUC-Mmr-061535	Microcebus murinus	45.16	4.00e-55	210.00
IUUC-Mmu-064171	Mus musculus	42.11	2.00e-55	211.00
IUUC-Mac-065339	Musa acuminata	52.94	0.00e+00	935.00
IUUC-Mpu-065697	Mustela putorius furo	45.16	8.00e-56	212.00
IUUC-Mlu-068177	Myotis lucifugus	42.74	1.00e-53	205.00
IUUC-Nfi-068366	Neosartorya fischeri	37.96	2.00e-44	174.00
IUUC-Nle-069704	Nomascus leucogenys	44.70	6.00e-55	209.00
IUUC-Opr-070982	Ochotona princeps	45.62	6.00e-56	213.00
IUUC-Ont-072115	Oreochromis niloticus	45.07	4.00e-52	200.00
IUUC-Oan-072991	Ornithorhynchus anatinus	48.31	5.00e-30	126.00
IUUC-Ocu-073994	Oryctolagus cuniculus	45.62	2.00e-55	211.00
IUUC-Oba-075236	Oryza barthii	51.84	0.00e+00	915.00
IUUC-Obr-076363	Oryza brachyantha	51.09	0.00e+00	898.00
IUUC-Ogl-077340	Oryza glaberrima	51.25	0.00e+00	893.00
IUUC-Ogu-078084	Oryza glumaepatula	50.25	0.00e+00	867.00
IUUC-Ome-081767	Oryza meridionalis	52.47	0.00e+00	918.00
IUUC-Oni-082897	Oryza nivara	51.74	0.00e+00	911.00
IUUC-Opu-083143	Oryza punctata	51.95	0.00e+00	920.00
IUUC-Oru-084813	Oryza rufipogon	51.84	0.00e+00	914.00
IUUC-Osa-085536	Oryza sativa	51.25	0.00e+00	892.00
IUUC-Ola-087200	Oryzias latipes	45.63	2.00e-49	191.00
IUUC-Oga-088737	Otolemur garnettii	45.16	3.00e-55	210.00
IUUC-Oar-090259	Ovis aries	28.24	3.00e-58	220.00
IUUC-Ptr-091146	Pan troglodytes	47.69	5.00e-51	196.00
IUUC-Pan-091743	Papio anubis	44.70	1.00e-54	208.00
IUUC-Psi-093231	Pelodiscus sinensis	46.48	9.00e-50	192.00
IUUC-Pma-094499	Petromyzon marinus	47.32	2.00e-53	204.00
IUUC-Pno-095065	Phaeosphaeria nodorum	50.00	3.00e-33	137.00
IUUC-Ppa-095324	Physcomitrella patens	66.38	2.00e-100	360.00
IUUC-Pfo-096799	Poecilia formosa	46.01	1.00e-52	202.00
IUUC-Pab-098220	Pongo abelii	44.70	1.00e-54	208.00
IUUC-Pop-099156	Populus trichocarpa	62.18	0.00e+00	1092.00
IUUC-Pca-100963	Procavia capensis	45.62	9.00e-56	212.00
IUUC-Ppe-101372	Prunus persica	64.13	0.00e+00	1199.00
IUUC-Pva-102384	Pteropus vampyrus	44.24	1.00e-53	205.00
IUUC-Pte-104381	Pyrenophora teres	43.37	1.00e-40	161.00
IUUC-Pyt-104607	Pyrenophora triticirepentis	45.14	6.00e-40	159.00
IUUC-Rno-105947	Rattus norvegicus	29.91	6.00e-67	249.00
IUUC-Sha-106642	Sarcophilus harrisii	45.62	1.00e-56	214.00
IUUC-Smo-109361	Selaginella moellendorffii	40.04	1.00e-179	623.00
IUUC-Sit-110041	Setaria italica	50.30	0.00e+00	876.00
IUUC-Sly-111922	Solanum lycopersicum	61.64	0.00e+00	1130.00
IUUC-Stu-112339	Solanum tuberosum	61.35	0.00e+00	1153.00
IUUC-Sar-113102	Sorex araneus	39.67	4.00e-19	88.20
IUUC-Sbi-114493	Sorghum bicolor	50.50	0.00e+00	891.00
IUUC-Ssc-115901	Sus scrofa	42.51	8.00e-56	212.00
IUUC-Tgu-116873	Taeniopygia guttata	47.44	1.00e-54	208.00
IUUC-Tru-118710	Takifugu rubripes	38.37	6.00e-43	169.00
IUUC-Tsy-119256	Tarsius syrichta	47.75	2.00e-45	177.00
IUUC-Tni-120839	Tetraodon nigroviridis	45.75	2.00e-52	201.00
IUUC-Tca-121665	Theobroma cacao	60.66	0.00e+00	1223.00
IUUC-Tae-124031	Triticum aestivum	50.20	0.00e+00	895.00
IUUC-Ttr-128990	Tursiops truncatus	30.71	7.00e-69	255.00
IUUC-Vvi-131411	Vitis vinifera	59.05	0.00e+00	1249.00
IUUC-Xma-133380	Xiphophorus maculatus	45.54	3.00e-52	200.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence