iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007660

Ensembl Protein ID

AT3G56440.1

UniProt Accession

Q0WPK3; Q9LXZ6; AT18D_ARATH

Genbank Protein ID

CAB88047.1; AEE79522.1; BAF00946.1

Protein Name

Autophagy-related protein 18d

Genbank Nucleotide ID

AL163972; CP002686; AK229064

Gene Name

ATG18D; At3g56440; T5P19_90

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G56440	AT3G56440.3	AT3G56440.3
AT3G56440	AT3G56440.2	AT3G56440.2
AT3G56440	AT3G56440.1	AT3G56440.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.80e-08	32.9	251	280

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           ++++++a+ ++   l+++sd gt+++++lr
   Q: 251  ADIYSIALsPNvQWLAVSSDKGTVHIFSLR 280
           579******99999*************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity).

Protein Sequence
(Fasta)

MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN 60
CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY PSNKVLIWDD HQGRCISEFT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAATATACA ATGACGACAG TTGACTAACG CAAACAACCG AATAAAGAAA GAACAAAATC 60
GGAAATTTTC GACGAAGATA AAATCATACA AGTTAGTATA CAGAGACGAT TCTCATAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0926--Vacuole
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

SMART

SM00320--WD40

Gene Ontology

GO:0034045--C:pre-autophagosomal structure membrane
GO:0005774--C:vacuolar membrane
GO:0006914--P:autophagy
GO:0015031--P:protein transport

KEGG

ath:AT3G56440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000966	Aegilops tauschii	72.48	9.00e-165	572.00
IUUC-Aly-006332	Arabidopsis lyrata	97.44	0.00e+00	801.00
IUUC-Ago-007948	Ashbya gossypii	30.99	2.00e-29	123.00
IUUC-Ang-009798	Aspergillus niger	29.90	2.00e-43	169.00
IUUC-Bci-013627	Botrytis cinerea	30.07	1.00e-42	166.00
IUUC-Bdi-014739	Brachypodium distachyon	71.27	3.00e-163	566.00
IUUC-Bol-015492	Brassica oleracea	91.97	0.00e+00	682.00
IUUC-Cho-024328	Choloepus hoffmanni	33.65	6.00e-34	137.00
IUUC-Cne-026947	Cryptococcus neoformans	32.10	1.00e-45	176.00
IUUC-Fso-038422	Fusarium solani	41.76	5.00e-46	177.00
IUUC-Hvu-047851	Hordeum vulgare	71.85	3.00e-165	573.00
IUUC-Lpe-051205	Leersia perrieri	69.31	2.00e-165	574.00
IUUC-Mor-057125	Magnaporthe oryzae	36.30	3.00e-40	158.00
IUUC-Mtr-058536	Medicago truncatula	74.23	1.00e-172	598.00
IUUC-Mac-064838	Musa acuminata	72.92	2.00e-168	584.00
IUUC-Nfi-068596	Neosartorya fischeri	40.57	6.00e-47	180.00
IUUC-Ncr-068833	Neurospora crassa	34.72	4.00e-38	151.00
IUUC-Oan-073084	Ornithorhynchus anatinus	32.32	1.00e-34	140.00
IUUC-Oba-075827	Oryza barthii	69.57	2.00e-166	578.00
IUUC-Obr-076476	Oryza brachyantha	69.84	1.00e-163	568.00
IUUC-Ogl-077630	Oryza glaberrima	69.57	2.00e-166	578.00
IUUC-Ogu-078126	Oryza glumaepatula	69.82	1.00e-166	578.00
IUUC-Oin-080115	Oryza indica	69.57	2.00e-166	578.00
IUUC-Olo-080657	Oryza longistaminata	71.24	2.00e-163	569.00
IUUC-Ome-081702	Oryza meridionalis	68.80	2.00e-162	564.00
IUUC-Oni-082884	Oryza nivara	71.01	3.00e-165	574.00
IUUC-Opu-083460	Oryza punctata	71.28	6.00e-165	574.00
IUUC-Oru-084193	Oryza rufipogon	69.57	2.00e-166	578.00
IUUC-Osa-085948	Oryza sativa	69.57	2.00e-166	578.00
IUUC-Pgr-103258	Puccinia graminis	30.52	7.00e-39	154.00
IUUC-Ptt-103915	Puccinia triticina	31.80	1.00e-34	140.00
IUUC-Spo-108254	Schizosaccharomyces pombe	33.70	2.00e-41	162.00
IUUC-Smo-109446	Selaginella moellendorffii	61.26	4.00e-140	490.00
IUUC-Sit-110095	Setaria italica	72.58	5.00e-168	583.00
IUUC-Sly-111030	Solanum lycopersicum	74.67	2.00e-168	584.00
IUUC-Sbi-114020	Sorghum bicolor	72.51	4.00e-167	580.00
IUUC-Tre-122255	Trichoderma reesei	36.48	5.00e-46	177.00
IUUC-Tvi-122643	Trichoderma virens	40.39	2.00e-48	186.00
IUUC-Tae-124901	Triticum aestivum	69.82	2.00e-165	574.00
IUUC-Tur-126757	Triticum urartu	71.58	1.00e-164	571.00
IUUC-Yli-134337	Yarrowia lipolytica	32.64	3.00e-45	175.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence