iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006364

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

GL348714

Gene Name

UBC28; ARALYDRAFT_674919

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Al_scaffold_0002_69	Al_scaffold_0002_69	Al_scaffold_0002_69

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E2/UBC	1.90e-56	190.4	5	139
UBD/UBC-like/UBD_UBC	2.40e-74	248.6	5	142

Active Site

Position(s)	Description	Evidence
85	Glycyl thioester intermediate	{ECO:0000256\|PROSITE-ProRule:PRU00388}

Domain Profile

E2/UBC

   S: 1    RlkkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltkifhPnvyenGkvClsilkeee 90
           R+ kelk+l+kdpp+++sa+pv e d+++w+++i+Gp+d+pY ggvF ++i+fp+dYPfkPPkv f tk+fhPnv++nG++Cl+ilk  e
   Q: 5    RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILK--E 91
           899*********************.9************************************************************9..* PP
   S: 91   kWspalsvesvllsiqsllaepnpesplneeaaellkknreeykkkvr 138
           +Wspal++++vllsi+sll++pnp++pl  e+a+++k++r++y++++r
   Q: 92   QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTAR 139
           ********************************************9987 PP

UBD/UBC-like/UBD_UBC

   S: 1    rikkelkdllrdeeaqisadlvdddlfelratiagppdspyeggvffltiklptdypfkppkvafitkiyhpninsngsicldilrsqws 90
           ri kelkdl++d+++ +sa++v +d+f+++ati+gp+dspy ggvf +ti++p dypfkppkvaf tk++hpn+nsngsicldil++qws
   Q: 5    RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWS 94
           899*************************************************************************************** PP
   S: 91   aaltlskvllslcslladaepddplvaeiariyktdkekykriarewt 138
           +alt+skvlls+csll+d++pddplv+eia++yktd+ ky+ +ar wt
   Q: 95   PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWT 142
           ***********************************************8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY 60
PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCGA AACGGATCTT GAAAGAGCTC AAGGATCTTC AGAAGGATCC TCCAACTTCC 60
TGCAGTGCTG GTTAGACTCT AGCTCTTCTT ACGTGTCTGA TCTATTTTTG AGCTTTGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR000608--UBQ-conjugat_E2
IPR023313--UBQ-conjugating_AS
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS00183--UBIQUITIN_CONJUGAT_1
PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF00179--UQ_con

Gene Ontology

GO:0005886--C:plasma membrane
GO:0005524--F:ATP binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_674919

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001778	Ailuropoda melanoleuca	80.28	1.00e-68	251.00
IUUC-Atr-002782	Amborella trichopoda	96.62	4.00e-84	302.00
IUUC-Afu-008956	Aspergillus fumigatus	80.27	1.00e-71	261.00
IUUC-Ani-009401	Aspergillus nidulans	80.27	7.00e-72	261.00
IUUC-Aor-010157	Aspergillus oryzae	80.27	3.00e-72	262.00
IUUC-Bdi-014970	Brachypodium distachyon	95.27	2.00e-83	300.00
IUUC-Cre-022765	Chlamydomonas reinhardtii	85.81	1.00e-75	274.00
IUUC-Cgl-026490	Colletotrichum gloeosporioides	80.95	2.00e-72	263.00
IUUC-Cne-026957	Cryptococcus neoformans	76.71	3.00e-68	249.00
IUUC-Dre-028686	Danio rerio	80.95	1.00e-71	260.00
IUUC-Dno-028952	Dasypus novemcinctus	80.28	8.00e-69	251.00
IUUC-Fox-038021	Fusarium oxysporum	80.95	5.00e-72	262.00
IUUC-Gmo-038775	Gadus morhua	78.91	8.00e-71	258.00
IUUC-Gma-043068	Glycine max	96.62	1.00e-84	303.00
IUUC-Hvu-047546	Hordeum vulgare	94.59	4.00e-83	298.00
IUUC-Lpe-050972	Leersia perrieri	97.97	3.00e-85	305.00
IUUC-Lma-053121	Leptosphaeria maculans	80.27	3.00e-72	263.00
IUUC-Mtr-058532	Medicago truncatula	96.62	1.00e-84	303.00
IUUC-Mvi-060397	Microbotryum violaceum	78.91	5.00e-70	255.00
IUUC-Mac-065337	Musa acuminata	97.30	5.00e-85	305.00
IUUC-Nfi-068599	Neosartorya fischeri	80.27	1.00e-71	261.00
IUUC-Ncr-068677	Neurospora crassa	78.91	3.00e-71	259.00
IUUC-Ont-072562	Oreochromis niloticus	80.95	3.00e-71	259.00
IUUC-Oba-075251	Oryza barthii	95.95	8.00e-84	301.00
IUUC-Obr-076658	Oryza brachyantha	97.97	3.00e-85	305.00
IUUC-Ogl-077124	Oryza glaberrima	97.30	7.00e-85	304.00
IUUC-Ogu-078338	Oryza glumaepatula	95.95	8.00e-84	301.00
IUUC-Oin-080092	Oryza indica	97.30	7.00e-85	304.00
IUUC-Olo-080786	Oryza longistaminata	94.59	2.00e-83	299.00
IUUC-Ome-081987	Oryza meridionalis	95.95	8.00e-84	301.00
IUUC-Oni-082631	Oryza nivara	95.95	8.00e-84	301.00
IUUC-Opu-083833	Oryza punctata	97.30	7.00e-85	304.00
IUUC-Oru-085020	Oryza rufipogon	95.95	8.00e-84	301.00
IUUC-Osa-086291	Oryza sativa	96.62	3.00e-84	302.00
IUUC-Olu-087615	Ostreococcus lucimarinus	82.31	2.00e-70	256.00
IUUC-Pno-094765	Phaeosphaeria nodorum	80.27	3.00e-72	263.00
IUUC-Ppa-095442	Physcomitrella patens	97.30	3.00e-84	302.00
IUUC-Pop-099853	Populus trichocarpa	96.62	1.00e-84	304.00
IUUC-Ppe-101387	Prunus persica	97.97	8.00e-85	304.00
IUUC-Ptt-103723	Puccinia triticina	76.43	1.00e-62	231.00
IUUC-Smo-109317	Selaginella moellendorffii	96.62	4.00e-84	301.00
IUUC-Sit-109936	Setaria italica	93.92	2.00e-83	300.00
IUUC-Sly-111571	Solanum lycopersicum	97.97	2.00e-84	303.00
IUUC-Stu-112764	Solanum tuberosum	97.97	2.00e-84	303.00
IUUC-Sbi-114213	Sorghum bicolor	96.62	2.00e-84	303.00
IUUC-Tca-121413	Theobroma cacao	98.65	4.00e-85	305.00
IUUC-Tre-122125	Trichoderma reesei	80.27	5.00e-71	258.00
IUUC-Tvi-122296	Trichoderma virens	80.27	5.00e-71	258.00
IUUC-Tur-126829	Triticum urartu	95.27	2.00e-83	300.00
IUUC-Tme-126912	Tuber melanosporum	78.23	1.00e-70	257.00
IUUC-Vda-129695	Verticillium dahliae	80.95	2.00e-72	263.00
IUUC-Vvi-130986	Vitis vinifera	97.30	2.00e-84	303.00
IUUC-Xma-133673	Xiphophorus maculatus	80.27	5.00e-71	258.00
IUUC-Yli-134353	Yarrowia lipolytica	78.23	1.00e-70	257.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence