iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006964

UUCD1 version

UUC-ArT-01463

Ensembl Protein ID

AT5G42200.1

UniProt Accession

Q8L9W3; Q4FE34; Q9FHW6; ATL23_ARATH

Genbank Protein ID

AAZ14061.1; BAB08453.1; AED94778.1; AAO41888.1; AAO50724.1; AAM65729.1

Protein Name

E3 ubiquitin-protein ligase ATL23; RING-H2 finger protein ATL23; RING-type E3 ubiquitin transferase ATL23

Genbank Nucleotide ID

DQ086857; AB017067; CP002688; BT003837; BT005191; AY088186

Gene Name

ATL23; At5g42200; MJC20.31

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G42200	AT5G42200.1	AT5G42200.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	8.60e-08	33.5	104	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cled++ g  ++++p C+H fh+ C   w       s++  CP+Cr
   Q: 104  CAVCLEDIESGqsTRLVPgCNHGFHQLCADTW------LSNHTVCPVCR 146
           ********55455888889*************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Protein Sequence
(Fasta)

MHYTRISPAL VPSLSPTAAA ESSGGGTMIA TVFMALLLPC VGMCIVFLIY LFLLWCSTRR 60
RIERLRFAEP VKPVTGKGLS VLELEKIPKL TGRELAVIAR STECAVCLED IESGQSTRLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAAAAGAAA CAAAATCATA ACAATAATAG TTTAACCTAA ACCCTGATAT TTGGCTCTAC 60
CGTGTCCTAG CCTCTCCTCT TTGTATAAAT AGCCGTTACT CTTTTTCACA TGATTTTCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination

KEGG

ath:AT5G42200

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006290	Arabidopsis lyrata	93.25	3.00e-82	296.00
IUUC-Bol-015170	Brassica oleracea	81.62	3.00e-63	232.00
IUUC-Bra-017135	Brassica rapa	79.39	2.00e-61	227.00
IUUC-Gma-042987	Glycine max	58.82	1.00e-41	160.00
IUUC-Hvu-047516	Hordeum vulgare	47.30	5.00e-15	72.80
IUUC-Lpe-050695	Leersia perrieri	32.52	6.00e-15	73.90
IUUC-Mtr-058369	Medicago truncatula	54.41	9.00e-38	147.00
IUUC-Pop-099353	Populus trichocarpa	58.09	8.00e-40	155.00
IUUC-Ppe-101352	Prunus persica	56.34	8.00e-38	148.00
IUUC-Sly-111161	Solanum lycopersicum	49.19	1.00e-29	121.00
IUUC-Stu-112507	Solanum tuberosum	48.20	3.00e-34	136.00
IUUC-Tca-120975	Theobroma cacao	54.41	2.00e-38	150.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence