iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_002185	EOX93344	EOX93344
TCM_002185	EOX93347	EOX93347
TCM_002185	EOX93345	EOX93345
TCM_002185	EOX93348	EOX93348

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.10e-08	33.8	49	115
E3 adaptor/Cullin RING/DCX/DWD	7.20e-31	105.8	551	582
UBD/Beta-Prp	7.90e-41	141.1	375	691

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 3    peeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
            +++lCpI +++ +d   +++G+++   +I  +l+++   cP ++q lt+++l Pn  l +l ++  +
   Q: 49   DKDLLCPICMQIIKDAFLTSCGHSFCYMCIITHLRNKSD-CPCCSQFLTNNQLFPNFLLDKLLKKTSS 115
           5789********************************999.****************999877776655 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlr 31
           gH+  v+ ++f s++ l+s+s D t+++WD++
   Q: 551  GHKKAVSYVKFlSENELASASTDSTLRLWDVK 582
           8999*******9999***************86 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl.........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
            + ++++ f +d++l+at++ +++ikv+d+++  l         + ++s  + + +++++++ +k  ++++   +++ vwd++t++ ++ +++he++++s+
   Q: 375  ANIVSSIEFNRDDELFATAGVSRRIKVFDFSM-VLndqadvhcpVVEMSTRS-KLSCLSWNKYSKnHIASSDYEGIVTVWDVQTRQSLMEYEEHEKRAWSV 473
           567899*************************9.5557778777766666666.699**9999886466666666*************************** PP
   S: 101  sfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtltgghtdsvyslsfdsngkelvsg 198
           +fs++  + lvsGs+d  ++vw ++++  + +++ +  + ++cv+++p + n+++ Gs+D  +  +dl +  + l+ ++g h+++v  ++f s+ +el+s+
   Q: 474  DFSRTEpSMLVSGSDDCKVKVWCTKQEASVLNIDMK--ANICCVKYNPGSsNYIAVGSADHHIHYYDLrNISSPLHVFSG-HKKAVSYVKFLSE-NELASA 570
           ****888***************88888888655554..459********9******************556889*****9.************7.7***** PP
   S: 199  sldgtvklwdlqtgec...............vrtlnghtdnvksvrfspnderlvsgssDgsiriW..dlrsgdllktlqlhn.........ssvisvavl 273
           s+d+t++lwd++++                 +rt++ght+  + v ++ n+e++++gs+ + ++++   + +  +++ +  +          s++is  ++
   Q: 571  STDSTLRLWDVKESLPdlfhmvtryhlvhlqLRTFRGHTNEKNFVGLTVNSEYIACGSEKNEVYVYhkEISKPVTWHRFGSQDmddadedagSHFISAVCW 671
           ************6666666667777778888***********************************44445555555555555****************** PP
   S: 274  sfgdnvlvlgsedskvniwk 293
           + + + ++++ + ++++++ 
   Q: 672  KSDSPTMLTANSQGTIKVLV 691
           ****************9975 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MEEFSTGTEP RVPAVKPDSK PSSFEEVPPL LEAATDVTAA AAVEVAEVDK DLLCPICMQI 60
IKDAFLTSCG HSFCYMCIIT HLRNKSDCPC CSQFLTNNQL FPNFLLDKLL KKTSSRQISK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTAAAATT TAACCACCGA AACAAAACCG GCAAGCGGGC CACACCTTCT ACTCATACAA 60
AGGCAACAAA AGAAAGCAAA CGGTCCAAAC CCCAGGTGAT TGCGTGGTCT ATTATAACCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027267--AH/BAR-dom
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	70.42	0.00e+00	940.00
IUUC-Aly-006014	Arabidopsis lyrata	79.83	0.00e+00	1132.00
IUUC-Ath-007636	Arabidopsis thaliana	79.39	0.00e+00	1132.00
IUUC-Bdi-014152	Brachypodium distachyon	71.67	0.00e+00	947.00
IUUC-Bol-016380	Brassica oleracea	78.13	0.00e+00	1090.00
IUUC-Bra-017690	Brassica rapa	77.44	0.00e+00	1071.00
IUUC-Cin-025375	Ciona intestinalis	37.73	2.00e-115	409.00
IUUC-Gmo-039245	Gadus morhua	38.58	9.00e-122	430.00
IUUC-Gma-044187	Glycine max	77.62	0.00e+00	1068.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	52.86	1.00e-69	254.00
IUUC-Lpe-051219	Leersia perrieri	72.57	0.00e+00	951.00
IUUC-Mtr-058555	Medicago truncatula	77.30	0.00e+00	1100.00
IUUC-Opr-070366	Ochotona princeps	44.95	6.00e-44	171.00
IUUC-Oba-075149	Oryza barthii	72.84	0.00e+00	962.00
IUUC-Obr-076563	Oryza brachyantha	73.22	0.00e+00	966.00
IUUC-Ogl-077701	Oryza glaberrima	73.19	0.00e+00	966.00
IUUC-Ogu-078383	Oryza glumaepatula	73.19	0.00e+00	966.00
IUUC-Oin-079965	Oryza indica	69.11	0.00e+00	887.00
IUUC-Olo-080639	Oryza longistaminata	70.85	0.00e+00	950.00
IUUC-Ome-081821	Oryza meridionalis	72.31	0.00e+00	892.00
IUUC-Oni-082622	Oryza nivara	73.19	0.00e+00	966.00
IUUC-Opu-083295	Oryza punctata	73.34	0.00e+00	968.00
IUUC-Oru-084661	Oryza rufipogon	73.19	0.00e+00	966.00
IUUC-Osa-085766	Oryza sativa	73.19	0.00e+00	966.00
IUUC-Ppa-095401	Physcomitrella patens	63.88	0.00e+00	831.00
IUUC-Pop-099319	Populus trichocarpa	78.53	0.00e+00	1104.00
IUUC-Smo-109418	Selaginella moellendorffii	61.96	0.00e+00	793.00
IUUC-Sit-110248	Setaria italica	72.91	0.00e+00	962.00
IUUC-Sly-110895	Solanum lycopersicum	79.75	0.00e+00	1083.00
IUUC-Stu-112386	Solanum tuberosum	76.35	0.00e+00	1026.00
IUUC-Sbi-113962	Sorghum bicolor	70.12	0.00e+00	937.00
IUUC-Tae-125440	Triticum aestivum	71.94	0.00e+00	970.00
IUUC-Tur-126557	Triticum urartu	71.36	0.00e+00	942.00
IUUC-Vvi-131386	Vitis vinifera	75.22	0.00e+00	1036.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence