iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-07	32.4	319	352

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           gH d  ++ a+ ++  +l++G+ D t+++WD+r 
   Q: 319  GHLDYSFSSAWhPNgQILATGNQDTTCRLWDVRN 352
           89999*******77799**************985 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDIFDNSDLE YLVDEFHADF DDDEPFGEVD VTSESDSDFM DSDFDFELSE SKTNNETSAL 60
EARNGKDIQG IPWESLNYTR DRYRENRLLH YKNFESLFRS REELDKECLQ VEKGKNFYDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGTCCTACC CAAAACCTTG TCATGTCCTC TCATTCCTCC ACCGTTTATA AGTAGGCCCT 60
TAACTCCAAT TCCCACCGTT TCTTCGCTAA CCACACAAAG CTTGTTCTTC TCCTTCCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000486	Aegilops tauschii	59.82	5.00e-155	540.00
IUUC-Atr-002734	Amborella trichopoda	65.13	8.00e-179	619.00
IUUC-Aly-005521	Arabidopsis lyrata	95.10	0.00e+00	865.00
IUUC-Bol-015183	Brassica oleracea	84.70	0.00e+00	779.00
IUUC-Bra-017403	Brassica rapa	84.04	0.00e+00	774.00
IUUC-Cme-027214	Cyanidioschyzon merolae	40.13	1.00e-53	204.00
IUUC-Gma-044288	Glycine max	74.06	0.00e+00	640.00
IUUC-Hvu-047718	Hordeum vulgare	66.17	8.00e-162	562.00
IUUC-Lpe-051582	Leersia perrieri	66.17	4.00e-162	563.00
IUUC-Mtr-058564	Medicago truncatula	74.19	0.00e+00	632.00
IUUC-Mac-065012	Musa acuminata	65.15	6.00e-158	550.00
IUUC-Obr-076093	Oryza brachyantha	63.93	1.00e-158	551.00
IUUC-Ogu-078133	Oryza glumaepatula	65.76	3.00e-160	557.00
IUUC-Oin-079185	Oryza indica	63.03	2.00e-156	544.00
IUUC-Olo-080502	Oryza longistaminata	56.00	4.00e-138	484.00
IUUC-Oni-082850	Oryza nivara	65.52	1.00e-159	555.00
IUUC-Smo-109252	Selaginella moellendorffii	63.38	5.00e-157	546.00
IUUC-Sit-110668	Setaria italica	66.05	1.00e-154	538.00
IUUC-Sly-111186	Solanum lycopersicum	72.61	0.00e+00	629.00
IUUC-Stu-111950	Solanum tuberosum	72.86	0.00e+00	633.00
IUUC-Sbi-113990	Sorghum bicolor	64.42	6.00e-162	563.00
IUUC-Tca-121603	Theobroma cacao	61.55	4.00e-168	583.00
IUUC-Tae-124553	Triticum aestivum	65.16	2.00e-159	555.00
IUUC-Tur-126710	Triticum urartu	53.73	6.00e-144	503.00
IUUC-Vvi-131311	Vitis vinifera	71.18	0.00e+00	666.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence