iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114135

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G169900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g016300	Sb06g016300.1	Sb06g016300.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.10e-32	110.1	20	91

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           ++p++f+CpIsl++Mr Pv l++G+tydr+sI++wl+sg++tcP t+ pl+++dlvPnltlr+li +w ++ 
   Q: 20   KIPSFFRCPISLDVMRSPVSLCTGVTYDRASIQRWLDSGNTTCPATMLPLRSTDLVPNLTLRSLIAHWAASA 91
           58******************************************************************9875 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MVRKETAMRL PPQHQALEVK IPSFFRCPIS LDVMRSPVSL CTGVTYDRAS IQRWLDSGNT 60
TCPATMLPLR STDLVPNLTL RSLIAHWAAS AASCSPTATD NSSATRTSSP ASLVRQVASA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCCGCATTC CCTCGTCCTC CGGCCGGCAG CCGTCGTCGC CAGCAGGAGC TTCCGATGGT 60
CCGGAAGGAG ACGGCCATGA GGCTGCCCCC GCAGCACCAG GCGCTGGAGG TCAAGATCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g022120

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002532	Amborella trichopoda	33.79	1.00e-53	202.00
IUUC-Aly-006554	Arabidopsis lyrata	75.00	1.00e-30	126.00
IUUC-Ath-006814	Arabidopsis thaliana	75.00	2.00e-30	126.00
IUUC-Bdi-014454	Brachypodium distachyon	71.37	3.00e-129	454.00
IUUC-Bol-015229	Brassica oleracea	77.14	3.00e-30	125.00
IUUC-Bra-017230	Brassica rapa	73.61	2.00e-30	125.00
IUUC-Lpe-050910	Leersia perrieri	69.53	3.00e-72	264.00
IUUC-Mtr-058715	Medicago truncatula	34.40	8.00e-55	206.00
IUUC-Obr-076177	Oryza brachyantha	76.39	3.00e-70	257.00
IUUC-Ogl-077051	Oryza glaberrima	71.95	5.00e-101	360.00
IUUC-Olo-080672	Oryza longistaminata	77.60	4.00e-63	233.00
IUUC-Oni-082297	Oryza nivara	71.49	5.00e-102	363.00
IUUC-Opu-083968	Oryza punctata	71.08	9.00e-116	409.00
IUUC-Oru-084478	Oryza rufipogon	70.14	3.00e-105	374.00
IUUC-Sit-110583	Setaria italica	79.82	3.00e-137	480.00
IUUC-Sly-111549	Solanum lycopersicum	35.45	4.00e-51	194.00
IUUC-Stu-112738	Solanum tuberosum	35.00	2.00e-50	192.00
IUUC-Tae-124143	Triticum aestivum	72.00	1.00e-137	481.00
IUUC-Vvi-131751	Vitis vinifera	36.12	5.00e-59	220.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence