iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-042796

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000839

Gene Name

LOC100792917; GLYMA_06G043800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA06G04670	GLYMA06G04670.3	GLYMA06G04670.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-50	168.1	491	529
UBD/Beta-Prp	3.90e-64	218.3	210	364

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH d+v+++af ++  +l+sGs D  +++W++++g+ +k
   Q: 491  GHRDPVYSVAFsPNgEYLASGSMDRYLHIWSVKEGKIVK 529
           8***********777*******************99887 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee................tlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
           v  lkgh+++v +++++ps   l+sGs d+t+r+w++  g c ++                  +++++ v+++ +++dg ll++Gs+D++ r+W
   Q: 210  VKLLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGACDSSvqnepvnvvvlqhfkeSTNEKSKDVTTLDWNGDGTLLATGSYDGQARIW 303
           7789**************************************99999*************98899999************************** PP
   S: 165  dlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks 227
            ++ g+l  tl + h +++ sl+++++g +l+sgs d+t ++w+++t e  + ++ ht ++++
   Q: 304  -SRDGELNCTLNK-HRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTVEWKQLFEFHTGPTLD 364
           .67********99.********************************99988888888877665 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MISITSTELN YLVFRYLHES GFTHSAFAFG YEAGIDKSKN DDSVVPPGAL VTFIQKGIQY 60
LELEANLSGS DADMDEDFSF LQPLDLITKG PSELHNIVKA RKENLRQHKF ESNKIINDLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATTTGATTC CGACCCGAGT ATCAAAACCC CAACCCAGCA ACAGCACCAC CACCTCAGCA 60
GCTGTTCTGT CTCCCTTAAT ATGTGCAGTT TACTCAGCAG TTGACACTTG AAACCACAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

gmx:100792917

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cpo-022080	Cavia porcellus	46.40	2.00e-133	469.00
IUUC-Cme-027258	Cyanidioschyzon merolae	36.32	1.00e-106	380.00
IUUC-Ete-032822	Echinops telfairi	43.41	2.00e-122	432.00
IUUC-Lpe-051084	Leersia perrieri	64.08	0.00e+00	689.00
IUUC-Mmu-063603	Mus musculus	48.08	6.00e-145	507.00
IUUC-Obr-076718	Oryza brachyantha	64.08	0.00e+00	694.00
IUUC-Oga-088357	Otolemur garnettii	47.36	6.00e-136	477.00
IUUC-Pma-094105	Petromyzon marinus	55.97	4.00e-38	151.00
IUUC-Rno-105411	Rattus norvegicus	48.08	1.00e-144	506.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence