iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-108881

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

GL377662

Gene Name

SELMODRAFT_269521

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_269521	EFJ09490	EFJ09490

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-17	61.5	308	346

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt+ v++++  ++   l+sGs+Dgt++vW++ tg++ k
   Q: 308  GHTGAVSSISAdPTgEWLLSGSRDGTVRVWEVQTGRCKK 346
           8********99977799*******************986 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MLELTVMKNL MIAKPPTRAI LPKTSLPQAP PRNTVGEIPL EFYKDEEHIG YDRAGRKLKK 60
QARKDQLDSF LDRSDDPKDW HKVYDEYNDE YVELTKEEMG MISRIRQGKL PHAEVDPYQP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGGAGC TGACGGTGAT GAAGAATCTG ATGATCGCGA AGCCGCCGAC GAGAGCGATT 60
CTTCCGAAGA CGAGGTCAGT CTCTTAAAAA AAATTGGATC CTTTCATTTT TAGTTTGCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

smo:SELMODRAFT_269521

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cja-019009	Callithrix jacchus	43.48	8.00e-139	486.00
IUUC-Lpe-051135	Leersia perrieri	58.07	0.00e+00	702.00
IUUC-Opr-071084	Ochotona princeps	49.80	6.00e-69	253.00
IUUC-Oba-075980	Oryza barthii	58.26	0.00e+00	701.00
IUUC-Ogu-078655	Oryza glumaepatula	60.10	0.00e+00	734.00
IUUC-Olo-080706	Oryza longistaminata	58.43	0.00e+00	707.00
IUUC-Ome-081716	Oryza meridionalis	57.24	0.00e+00	685.00
IUUC-Oni-082508	Oryza nivara	58.43	0.00e+00	726.00
IUUC-Opu-083707	Oryza punctata	58.26	0.00e+00	707.00
IUUC-Oru-084453	Oryza rufipogon	58.43	0.00e+00	707.00
IUUC-Oar-090058	Ovis aries	41.71	2.00e-75	276.00
IUUC-Ptr-090631	Pan troglodytes	42.63	2.00e-61	228.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence