iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dse-031308

Ensembl Protein ID

EME39416

UniProt Accession

M2YKC0; M2YKC0_DOTSN

Genbank Protein ID

EME39416.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

KB446545

Gene Name

YTM1; DOTSEDRAFT_56810

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
DOTSEDRAFT_56810	EME39416	EME39416

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.80e-33	111.1	102	138

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf....sdtllvsGsdDgtikvWDlrtgv 34
           H d+v++++     +  +++sGs Dg++ +W++++g+
   Q: 102  HDDWVSSVDIlsqgPQSRILSGSFDGSLSIWNMSSGK 138
           9********889775589**************99987 PP

Organism

Dothistroma septosporum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MATDGTAQVR IRLKTKDSEI ELPETGPILV TTDLKRYQLS TLVNRLLDTE KPIPLEFLVN 60
GQFLRTSLDD FLTQNGISAE TTLFVEYVKA LVPPTHVASY EHDDWVSSVD ILSQGPQSRI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGGGACTA TGGCGACAGA CGGCACAGCG CAGGTGCGCA TTCGGCTCAA GACTAAGGAT 60
AGCGAGATTG AGTTGCCGGA GACTGGGCCG ATTCTCGTGA CAACAGGTAA GTTTGAAGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	33.33	1.00e-51	195.00
IUUC-Aml-001997	Ailuropoda melanoleuca	29.46	6.00e-35	139.00
IUUC-Atr-002544	Amborella trichopoda	30.08	4.00e-40	157.00
IUUC-Apl-003981	Anas platyrhynchos	29.29	3.00e-36	144.00
IUUC-Aca-004370	Anolis carolinensis	29.87	2.00e-43	167.00
IUUC-Aly-006455	Arabidopsis lyrata	29.10	5.00e-47	180.00
IUUC-Ath-006669	Arabidopsis thaliana	29.98	1.00e-44	172.00
IUUC-Ago-007864	Ashbya gossypii	38.99	2.00e-86	310.00
IUUC-Acl-008177	Aspergillus clavatus	50.75	7.00e-123	432.00
IUUC-Afl-008617	Aspergillus flavus	51.18	2.00e-120	423.00
IUUC-Afu-008752	Aspergillus fumigatus	51.07	8.00e-120	422.00
IUUC-Ani-009136	Aspergillus nidulans	52.29	2.00e-123	433.00
IUUC-Ang-009701	Aspergillus niger	51.09	6.00e-116	409.00
IUUC-Aor-009884	Aspergillus oryzae	51.40	8.00e-121	425.00
IUUC-Ate-010472	Aspergillus terreus	45.31	1.00e-66	244.00
IUUC-Ame-011432	Astyanax mexicanus	28.57	1.00e-40	159.00
IUUC-Bgr-012218	Blumeria graminis	44.72	1.00e-98	351.00
IUUC-Bta-012829	Bos taurus	27.53	4.00e-35	140.00
IUUC-Bci-013953	Botrytis cinerea	44.63	5.00e-109	385.00
IUUC-Bdi-014351	Brachypodium distachyon	33.62	9.00e-49	186.00
IUUC-Bol-015618	Brassica oleracea	31.06	7.00e-47	179.00
IUUC-Bra-017876	Brassica rapa	31.87	2.00e-49	187.00
IUUC-Cel-018569	Caenorhabditis elegans	26.15	1.00e-25	108.00
IUUC-Cja-019468	Callithrix jacchus	28.05	8.00e-34	135.00
IUUC-Cfa-020471	Canis familiaris	27.79	1.00e-33	135.00
IUUC-Cpo-022260	Cavia porcellus	27.53	9.00e-33	132.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	33.33	4.00e-47	180.00
IUUC-Csa-023989	Chlorocebus sabaeus	27.79	4.00e-33	134.00
IUUC-Cho-024426	Choloepus hoffmanni	28.32	2.00e-28	118.00
IUUC-Cin-025789	Ciona intestinalis	28.41	3.00e-33	134.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	43.46	1.00e-27	114.00
IUUC-Cne-027063	Cryptococcus neoformans	24.95	2.00e-25	108.00
IUUC-Dre-027907	Danio rerio	29.61	2.00e-43	167.00
IUUC-Dno-029225	Dasypus novemcinctus	28.05	3.00e-35	140.00
IUUC-Dor-031082	Dipodomys ordii	28.44	6.00e-17	80.10
IUUC-Dme-032189	Drosophila melanogaster	26.62	3.00e-35	140.00
IUUC-Ete-032247	Echinops telfairi	26.42	6.00e-29	120.00
IUUC-Eca-034285	Equus caballus	27.27	3.00e-34	137.00
IUUC-Eeu-035322	Erinaceus europaeus	24.61	1.00e-26	112.00
IUUC-Fca-036114	Felis catus	28.05	9.00e-35	139.00
IUUC-Fal-036891	Ficedula albicollis	29.02	8.00e-31	125.00
IUUC-Fox-037965	Fusarium oxysporum	43.84	8.00e-104	369.00
IUUC-Fso-038244	Fusarium solani	45.30	8.00e-105	372.00
IUUC-Gmo-039040	Gadus morhua	27.52	5.00e-43	166.00
IUUC-Ggr-040093	Gaeumannomyces graminis	42.83	4.00e-84	303.00
IUUC-Gga-040610	Gallus gallus	28.83	2.00e-38	151.00
IUUC-Gac-042117	Gasterosteus aculeatus	28.35	8.00e-41	159.00
IUUC-Gma-043756	Glycine max	32.31	6.00e-49	186.00
IUUC-Ggo-045179	Gorilla gorilla	28.05	1.00e-34	139.00
IUUC-Hsa-046114	Homo sapiens	28.05	6.00e-34	136.00
IUUC-Hvu-047331	Hordeum vulgare	32.55	2.00e-41	161.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	28.05	5.00e-35	140.00
IUUC-Kpa-049304	Komagataella pastoris	41.83	2.00e-93	334.00
IUUC-Lch-050655	Latimeria chalumnae	27.94	5.00e-29	120.00
IUUC-Lpe-051675	Leersia perrieri	34.06	2.00e-54	204.00
IUUC-Loc-052868	Lepisosteus oculatus	27.79	2.00e-41	161.00
IUUC-Lma-053258	Leptosphaeria maculans	45.61	3.00e-106	378.00
IUUC-Laf-053993	Loxodonta africana	27.98	6.00e-36	143.00
IUUC-Mcc-055128	Macaca mulatta	23.81	2.00e-20	91.30
IUUC-Meu-056501	Macropus eugenii	27.81	9.00e-33	132.00
IUUC-Mor-057114	Magnaporthe oryzae	46.74	3.00e-105	374.00
IUUC-Mpo-057463	Magnaporthe poae	47.30	1.00e-33	134.00
IUUC-Mtr-058367	Medicago truncatula	28.41	3.00e-38	151.00
IUUC-Mla-059107	Melampsora laricipopulina	28.60	1.00e-47	182.00
IUUC-Mga-059745	Meleagris gallopavo	29.08	1.00e-37	148.00
IUUC-Mvi-060362	Microbotryum violaceum	29.57	1.00e-41	162.00
IUUC-Mdo-062257	Monodelphis domestica	27.89	6.00e-36	143.00
IUUC-Mmu-063546	Mus musculus	27.53	4.00e-35	140.00
IUUC-Mac-065540	Musa acuminata	31.51	7.00e-46	176.00
IUUC-Mpu-066284	Mustela putorius furo	28.05	2.00e-35	142.00
IUUC-Mlu-067241	Myotis lucifugus	28.05	2.00e-35	141.00
IUUC-Nfi-068260	Neosartorya fischeri	51.07	7.00e-122	428.00
IUUC-Ncr-068719	Neurospora crassa	45.74	6.00e-99	352.00
IUUC-Nle-068981	Nomascus leucogenys	27.79	2.00e-33	134.00
IUUC-Opr-071218	Ochotona princeps	27.27	2.00e-36	144.00
IUUC-Ont-071646	Oreochromis niloticus	26.56	3.00e-37	147.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.12	3.00e-41	160.00
IUUC-Ocu-074008	Oryctolagus cuniculus	27.79	5.00e-36	143.00
IUUC-Oba-075712	Oryza barthii	31.63	2.00e-36	145.00
IUUC-Obr-076721	Oryza brachyantha	33.69	7.00e-52	196.00
IUUC-Ogl-077229	Oryza glaberrima	36.59	1.00e-53	202.00
IUUC-Ogu-078977	Oryza glumaepatula	31.63	1.00e-36	145.00
IUUC-Oin-079683	Oryza indica	36.47	1.00e-54	205.00
IUUC-Olo-080291	Oryza longistaminata	34.10	5.00e-30	122.00
IUUC-Ome-081834	Oryza meridionalis	36.52	3.00e-53	201.00
IUUC-Oni-082507	Oryza nivara	35.51	9.00e-51	192.00
IUUC-Opu-083396	Oryza punctata	36.09	3.00e-52	197.00
IUUC-Oru-085220	Oryza rufipogon	35.51	1.00e-50	191.00
IUUC-Osa-085767	Oryza sativa	36.47	1.00e-54	205.00
IUUC-Ola-087420	Oryzias latipes	26.40	2.00e-40	157.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.85	7.00e-34	136.00
IUUC-Oga-088264	Otolemur garnettii	28.05	2.00e-35	141.00
IUUC-Oar-089335	Ovis aries	27.01	2.00e-34	138.00
IUUC-Ptr-091320	Pan troglodytes	28.05	6.00e-34	136.00
IUUC-Pan-092833	Papio anubis	27.79	2.00e-33	135.00
IUUC-Psi-093504	Pelodiscus sinensis	29.46	1.00e-34	139.00
IUUC-Pma-094189	Petromyzon marinus	29.35	4.00e-39	154.00
IUUC-Pno-094929	Phaeosphaeria nodorum	44.30	1.00e-101	361.00
IUUC-Ppa-095429	Physcomitrella patens	34.30	3.00e-55	207.00
IUUC-Pfo-096337	Poecilia formosa	26.79	2.00e-40	157.00
IUUC-Pab-097571	Pongo abelii	28.05	6.00e-34	136.00
IUUC-Pop-099977	Populus trichocarpa	30.09	1.00e-43	168.00
IUUC-Pca-100394	Procavia capensis	27.20	1.00e-28	119.00
IUUC-Ppe-101848	Prunus persica	33.83	9.00e-51	192.00
IUUC-Pva-102921	Pteropus vampyrus	28.00	5.00e-17	80.50
IUUC-Pgr-103637	Puccinia graminis	27.97	1.00e-49	189.00
IUUC-Ptt-103781	Puccinia triticina	28.57	8.00e-49	186.00
IUUC-Pte-104135	Pyrenophora teres	47.47	9.00e-103	367.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	46.19	1.00e-103	368.00
IUUC-Rno-105114	Rattus norvegicus	28.76	1.00e-36	145.00
IUUC-Sce-106401	Saccharomyces cerevisiae	39.83	4.00e-90	323.00
IUUC-Sha-107122	Sarcophilus harrisii	26.55	2.00e-32	131.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	34.97	4.00e-77	280.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.53	4.00e-76	276.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	46.37	2.00e-114	404.00
IUUC-Smo-108720	Selaginella moellendorffii	28.93	7.00e-39	152.00
IUUC-Sit-110354	Setaria italica	32.98	3.00e-49	187.00
IUUC-Sly-111178	Solanum lycopersicum	30.19	2.00e-43	167.00
IUUC-Stu-112778	Solanum tuberosum	31.37	1.00e-40	159.00
IUUC-Sbi-114193	Sorghum bicolor	32.26	2.00e-49	188.00
IUUC-Sre-115002	Sporisorium reilianum	37.04	3.00e-22	98.20
IUUC-Ssc-116066	Sus scrofa	27.27	7.00e-34	136.00
IUUC-Tgu-117048	Taeniopygia guttata	29.59	1.00e-36	145.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.34	3.00e-36	144.00
IUUC-Tca-121605	Theobroma cacao	32.82	1.00e-48	185.00
IUUC-Tre-121947	Trichoderma reesei	45.26	5.00e-107	379.00
IUUC-Tvi-122481	Trichoderma virens	45.59	1.00e-107	381.00
IUUC-Tae-123504	Triticum aestivum	33.76	1.00e-51	195.00
IUUC-Tur-126586	Triticum urartu	33.10	2.00e-46	178.00
IUUC-Tme-126900	Tuber melanosporum	42.99	2.00e-95	341.00
IUUC-Uma-129628	Ustilago maydis	27.29	8.00e-24	103.00
IUUC-Vpa-130260	Vicugna pacos	27.27	8.00e-35	139.00
IUUC-Vvi-131009	Vitis vinifera	32.23	1.00e-49	188.00
IUUC-Xtr-132083	Xenopus tropicalis	28.34	3.00e-40	157.00
IUUC-Xma-133094	Xiphophorus maculatus	27.07	3.00e-41	160.00
IUUC-Yli-134531	Yarrowia lipolytica	35.92	3.00e-60	224.00
IUUC-Zma-135509	Zea mays	32.04	3.00e-48	184.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence