iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d031832	Zm00001d031832_T009	Zm00001d031832_T009
Zm00001d031832	Zm00001d031832_T012	Zm00001d031832_T012
Zm00001d031832	Zm00001d031832_T002	Zm00001d031832_T002
Zm00001d031832	Zm00001d031832_T003	Zm00001d031832_T003
Zm00001d031832	Zm00001d031832_T013	Zm00001d031832_T013
Zm00001d031832	Zm00001d031832_T004	Zm00001d031832_T004
Zm00001d031832	Zm00001d031832_T005	Zm00001d031832_T005
Zm00001d031832	Zm00001d031832_T001	Zm00001d031832_T001
Zm00001d031832	Zm00001d031832_T006	Zm00001d031832_T006

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.80e-42	147.7	595	684

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 246  rekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsGsls...sGHYvayvknekgkWllfdDskVtevkeeevleetgstaYv 332
             ki+k + fp++L+l+++++ ++++   +  Y+L+avvvH+  ++   sGHYv+yvk+++gkW++ dDs+V++v+ ++v +   + aY+
   Q: 595  FGKISKAIRFPETLNLARYMNPDTDDI--SPVYSLYAVVVHHDVMNaafSGHYVCYVKDTQGKWFKADDSQVKPVSLDNVMS---KCAYM 679
           469*******************88877..9***********995443349********************************...9**** PP
   S: 333  lfYkr 337
           l+Y r
   Q: 680  LLYAR 684
           ***87 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MEEAAESSSA AAAAALVLAL VALVVVPAVA LLVRGRWRRA AARREEVRRL ARLAAEESEL 60
AERESALAYY SELFPGVVHA AGAPEWGPPP VAVPVPAQEE FDAQPQPSVG AKGVCAVCFR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGAGG CGGCGGAGTC GTCCTCGGCG GCGGCGGCGG CGGCCCTGGT GCTGGCGCTG 60
GTGGCGCTCG TCGTGGTGCC GGCGGTGGCG CTGCTGGTGC GGGGCCGCTG GCGCCGGGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bdi-014317	Brachypodium distachyon	62.29	0.00e+00	630.00
IUUC-Lpe-051561	Leersia perrieri	58.04	9.00e-167	580.00
IUUC-Oin-079174	Oryza indica	59.75	1.00e-170	593.00
IUUC-Opu-084076	Oryza punctata	59.82	1.00e-173	603.00
IUUC-Sit-110237	Setaria italica	78.37	0.00e+00	782.00
IUUC-Sbi-114259	Sorghum bicolor	84.21	0.00e+00	881.00
IUUC-Tae-125220	Triticum aestivum	58.55	2.00e-165	575.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence