iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.00e-30	102.4	97	135

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvll 36
           gH dsv  l++  s+ +l+v++s+D+ti++WD+rt +++
   Q: 97   GHGDSVDQLCWhpSNpDLFVTASGDKTIRIWDVRTTKCI 135
           8***********8778*******************9997 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAVPAAVLGP SALSQSGPGS MAPWCSVSSG PSRYVLGMQE LFRGHSKTRE FPAHSAKVHS 60
VAWSCDGRRL ASGSFDKTAS VFLLEKDRLV KENNYRGHGD SVDQLCWHPS NPDLFVTASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCAGCTTC CGGCGCGCGA TCCTTGCGGA GAGGGCCATG GCGGTTCCCG CCGCTGTCCT 60
GGGGCCCTCT GCCCTCAGCC AGAGCGGCCC CGGGTCGATG GCGCCCTGGT GCTCGGTGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR013979--TIF_beta_prop-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF08662--eIF2A
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000784--C:nuclear chromosome, telomeric region
GO:0000445--C:THO complex part of transcription export complex
GO:0006406--P:mRNA export from nucleus
GO:0046784--P:viral mRNA export from host cell nucleus

KEGG

rno:290519

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000099	Aegilops tauschii	46.56	9.00e-84	303.00
IUUC-Aml-001264	Ailuropoda melanoleuca	99.13	0.00e+00	711.00
IUUC-Atr-003050	Amborella trichopoda	50.99	1.00e-91	329.00
IUUC-Apl-003426	Anas platyrhynchos	84.59	3.00e-129	453.00
IUUC-Aca-004931	Anolis carolinensis	94.14	2.00e-124	437.00
IUUC-Aly-006237	Arabidopsis lyrata	49.01	2.00e-90	325.00
IUUC-Ath-007581	Arabidopsis thaliana	49.34	9.00e-91	326.00
IUUC-Acl-008253	Aspergillus clavatus	27.78	7.00e-38	151.00
IUUC-Afl-008519	Aspergillus flavus	31.01	5.00e-40	158.00
IUUC-Afu-008886	Aspergillus fumigatus	26.29	2.00e-35	143.00
IUUC-Ani-009275	Aspergillus nidulans	29.71	6.00e-40	158.00
IUUC-Ang-009862	Aspergillus niger	29.23	7.00e-39	154.00
IUUC-Ate-010247	Aspergillus terreus	27.58	2.00e-37	149.00
IUUC-Ame-010828	Astyanax mexicanus	92.81	0.00e+00	626.00
IUUC-Bgr-012163	Blumeria graminis	29.34	2.00e-34	139.00
IUUC-Bta-013514	Bos taurus	86.04	2.00e-174	605.00
IUUC-Bci-013639	Botrytis cinerea	30.45	2.00e-43	169.00
IUUC-Bdi-015049	Brachypodium distachyon	47.25	5.00e-83	300.00
IUUC-Bol-015401	Brassica oleracea	50.49	1.00e-89	322.00
IUUC-Bra-017867	Brassica rapa	50.16	3.00e-89	321.00
IUUC-Cel-018699	Caenorhabditis elegans	33.98	6.00e-46	177.00
IUUC-Cja-019591	Callithrix jacchus	97.72	0.00e+00	714.00
IUUC-Cfa-020692	Canis familiaris	98.58	0.00e+00	724.00
IUUC-Cpo-022135	Cavia porcellus	85.23	4.00e-178	617.00
IUUC-Cre-022572	Chlamydomonas reinhardtii	34.58	5.00e-44	171.00
IUUC-Csa-023408	Chlorocebus sabaeus	98.58	0.00e+00	720.00
IUUC-Cho-024349	Choloepus hoffmanni	96.65	6.00e-120	422.00
IUUC-Cin-025418	Ciona intestinalis	71.01	1.00e-54	204.00
IUUC-Csv-026130	Ciona savignyi	66.25	4.00e-129	453.00
IUUC-Cgl-026744	Colletotrichum gloeosporioides	31.14	4.00e-44	171.00
IUUC-Dre-028634	Danio rerio	91.56	2.00e-180	624.00
IUUC-Dno-029449	Dasypus novemcinctus	98.58	0.00e+00	722.00
IUUC-Dor-030301	Dipodomys ordii	78.47	8.00e-122	429.00
IUUC-Dse-031341	Dothistroma septosporum	27.72	9.00e-32	130.00
IUUC-Dme-031674	Drosophila melanogaster	63.55	8.00e-123	432.00
IUUC-Ete-033136	Echinops telfairi	96.44	0.00e+00	682.00
IUUC-Eca-034432	Equus caballus	90.31	0.00e+00	662.00
IUUC-Fca-035694	Felis catus	98.58	0.00e+00	724.00
IUUC-Fal-037328	Ficedula albicollis	96.25	0.00e+00	645.00
IUUC-Fox-037894	Fusarium oxysporum	32.13	2.00e-43	169.00
IUUC-Fso-038266	Fusarium solani	29.33	5.00e-40	157.00
IUUC-Gmo-039617	Gadus morhua	91.25	1.00e-180	625.00
IUUC-Ggr-039819	Gaeumannomyces graminis	28.57	9.00e-39	154.00
IUUC-Gga-041164	Gallus gallus	95.58	0.00e+00	636.00
IUUC-Gac-042407	Gasterosteus aculeatus	92.19	0.00e+00	630.00
IUUC-Gma-043663	Glycine max	50.00	1.00e-91	329.00
IUUC-Ggo-044989	Gorilla gorilla	98.29	0.00e+00	719.00
IUUC-Hsa-046784	Homo sapiens	98.86	0.00e+00	723.00
IUUC-Hvu-047633	Hordeum vulgare	46.51	7.00e-58	216.00
IUUC-Itr-048184	Ictidomys tridecemlineatus	77.05	4.00e-153	533.00
IUUC-Kpa-049182	Komagataella pastoris	26.53	1.00e-16	80.50
IUUC-Lch-049894	Latimeria chalumnae	96.25	0.00e+00	644.00
IUUC-Lpe-051061	Leersia perrieri	40.85	2.00e-62	232.00
IUUC-Loc-052424	Lepisosteus oculatus	94.06	0.00e+00	637.00
IUUC-Lma-053127	Leptosphaeria maculans	33.22	2.00e-47	184.00
IUUC-Laf-053396	Loxodonta africana	99.40	0.00e+00	689.00
IUUC-Mcc-055517	Macaca mulatta	98.58	0.00e+00	721.00
IUUC-Meu-056034	Macropus eugenii	98.44	0.00e+00	662.00
IUUC-Mor-057011	Magnaporthe oryzae	25.52	7.00e-27	114.00
IUUC-Mpo-057490	Magnaporthe poae	28.57	4.00e-39	155.00
IUUC-Mtr-057927	Medicago truncatula	49.21	1.00e-91	329.00
IUUC-Mla-058945	Melampsora laricipopulina	34.24	3.00e-46	178.00
IUUC-Mga-060155	Meleagris gallopavo	95.22	8.00e-142	496.00
IUUC-Mvi-060344	Microbotryum violaceum	36.69	1.00e-53	203.00
IUUC-Mmr-060834	Microcebus murinus	98.01	0.00e+00	720.00
IUUC-Mdo-062587	Monodelphis domestica	98.75	0.00e+00	659.00
IUUC-Mmu-063395	Mus musculus	99.43	0.00e+00	727.00
IUUC-Mac-064579	Musa acuminata	49.01	2.00e-90	325.00
IUUC-Mpu-066688	Mustela putorius furo	96.07	5.00e-175	606.00
IUUC-Mlu-067299	Myotis lucifugus	98.29	0.00e+00	719.00
IUUC-Nfi-068562	Neosartorya fischeri	28.07	9.00e-37	147.00
IUUC-Ncr-068654	Neurospora crassa	28.72	1.00e-34	140.00
IUUC-Nle-069736	Nomascus leucogenys	97.72	0.00e+00	712.00
IUUC-Ont-071763	Oreochromis niloticus	92.81	0.00e+00	631.00
IUUC-Ocu-074909	Oryctolagus cuniculus	98.01	0.00e+00	697.00
IUUC-Oba-075902	Oryza barthii	41.18	3.00e-63	234.00
IUUC-Obr-076613	Oryza brachyantha	47.71	3.00e-82	298.00
IUUC-Ogl-077009	Oryza glaberrima	47.39	5.00e-81	294.00
IUUC-Ogu-078344	Oryza glumaepatula	41.18	3.00e-63	234.00
IUUC-Oin-079773	Oryza indica	47.39	5.00e-81	294.00
IUUC-Olo-080474	Oryza longistaminata	43.88	4.00e-45	174.00
IUUC-Ome-081837	Oryza meridionalis	43.48	1.00e-31	128.00
IUUC-Oni-082263	Oryza nivara	41.18	3.00e-63	234.00
IUUC-Opu-083813	Oryza punctata	47.39	7.00e-81	293.00
IUUC-Oru-084610	Oryza rufipogon	41.18	3.00e-63	234.00
IUUC-Osa-085415	Oryza sativa	47.39	4.00e-81	294.00
IUUC-Ola-086659	Oryzias latipes	93.12	0.00e+00	632.00
IUUC-Olu-087649	Ostreococcus lucimarinus	37.76	4.00e-56	211.00
IUUC-Oga-087923	Otolemur garnettii	98.58	0.00e+00	723.00
IUUC-Oar-089688	Ovis aries	95.44	0.00e+00	702.00
IUUC-Ptr-091628	Pan troglodytes	98.86	0.00e+00	723.00
IUUC-Pan-092586	Papio anubis	97.46	0.00e+00	714.00
IUUC-Psi-093701	Pelodiscus sinensis	94.12	5.00e-115	406.00
IUUC-Pma-094465	Petromyzon marinus	86.98	1.00e-170	592.00
IUUC-Pno-094767	Phaeosphaeria nodorum	33.70	4.00e-47	182.00
IUUC-Ppa-095195	Physcomitrella patens	52.00	1.00e-97	349.00
IUUC-Pfo-097383	Poecilia formosa	88.92	0.00e+00	627.00
IUUC-Pab-098669	Pongo abelii	98.58	0.00e+00	720.00
IUUC-Pop-099409	Populus trichocarpa	50.66	5.00e-92	330.00
IUUC-Pca-100769	Procavia capensis	86.89	1.00e-177	615.00
IUUC-Ppe-101321	Prunus persica	50.65	1.00e-92	333.00
IUUC-Pva-102759	Pteropus vampyrus	98.01	0.00e+00	719.00
IUUC-Pgr-103535	Puccinia graminis	35.29	2.00e-52	199.00
IUUC-Ptt-103820	Puccinia triticina	35.62	3.00e-53	201.00
IUUC-Pte-104271	Pyrenophora teres	31.77	4.00e-43	168.00
IUUC-Pyt-104500	Pyrenophora triticirepentis	31.30	2.00e-37	150.00
IUUC-Sha-107146	Sarcophilus harrisii	93.57	0.00e+00	650.00
IUUC-Sja-107865	Schizosaccharomyces japonicus	35.71	6.00e-53	201.00
IUUC-Spo-108324	Schizosaccharomyces pombe	41.15	2.00e-60	225.00
IUUC-Smo-108990	Selaginella moellendorffii	51.29	1.00e-92	333.00
IUUC-Sit-110773	Setaria italica	48.84	4.00e-82	298.00
IUUC-Sly-111619	Solanum lycopersicum	50.99	2.00e-93	335.00
IUUC-Stu-112241	Solanum tuberosum	51.32	9.00e-94	336.00
IUUC-Sbi-114842	Sorghum bicolor	49.83	3.00e-83	301.00
IUUC-Sre-115070	Sporisorium reilianum	32.73	1.00e-48	186.00
IUUC-Ssc-115581	Sus scrofa	98.58	0.00e+00	724.00
IUUC-Tgu-117354	Taeniopygia guttata	94.89	5.00e-179	619.00
IUUC-Tru-117745	Takifugu rubripes	90.94	3.00e-179	620.00
IUUC-Tni-120050	Tetraodon nigroviridis	90.00	4.00e-177	613.00
IUUC-Tca-121279	Theobroma cacao	51.32	1.00e-91	329.00
IUUC-Tre-121952	Trichoderma reesei	31.07	1.00e-44	173.00
IUUC-Tvi-122581	Trichoderma virens	31.23	1.00e-45	176.00
IUUC-Tae-123910	Triticum aestivum	48.97	9.00e-84	303.00
IUUC-Tur-126279	Triticum urartu	46.86	1.00e-82	299.00
IUUC-Tme-127000	Tuber melanosporum	30.47	2.00e-38	152.00
IUUC-Ttr-128405	Tursiops truncatus	100.00	1.00e-157	548.00
IUUC-Uma-129547	Ustilago maydis	34.15	7.00e-49	187.00
IUUC-Vda-129689	Verticillium dahliae	29.26	1.00e-36	147.00
IUUC-Vvi-131345	Vitis vinifera	51.32	2.00e-94	338.00
IUUC-Xtr-132136	Xenopus tropicalis	88.64	6.00e-170	589.00
IUUC-Xma-133767	Xiphophorus maculatus	91.56	0.00e+00	626.00
IUUC-Yli-134522	Yarrowia lipolytica	28.53	1.00e-28	120.00
IUUC-Zma-135816	Zea mays	49.17	3.00e-82	298.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence