iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-098835

Ensembl Protein ID

POPTR_0006s07850.1

UniProt Accession

B9HBB5; B9HBB5_POPTR

Genbank Protein ID

EEE91652.1

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_819132; POPTR_0006s07850g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s07850	POPTR_0006s07850.1	POPTR_0006s07850.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.60e-27	93.8	555	586
UBD/Beta-Prp	1.40e-60	206.2	184	504

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH+d++t+l+f  d + l+s+s Dgt+++WD+
   Q: 555  GHADRITDLCFsEDgKWLLSSSMDGTLRIWDV 586
           8**********955699**************6 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkllrsl.sgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlk.ghedsvls 99
           v +cv  sp  +++a+g+ dg+i v++++    + ++  +  ++vt+++fs dg+ +l++g++ ++i +w+l+++k  ++++ +h++s+ s
   Q: 184  VTSCVS-SPALDVVAVGCVDGKIHVHNIRYDEEVVTFvHSMRGAVTSLSFSTDGQpLLASGGSSGVISIWNLEKRKLQSVVReAHDSSIIS 273
           445554.59999*****************999999998999*************99*********************9999889******* PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgght.dsvysl 186
           l+f ++  +l s s+d+ i++w  +t         + sgh++   c+++  +g+ + s++ Dr+ rl+++ +++  r+l++ h  ++ ++l
   Q: 274  LHFLANEPVLMSSSADNSIKIWIFDTTDGDPRllrFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVsKRAKKL 364
           *********************97777654444445********************************************776751567788 PP
   S: 187  sfdsng...................kelvsgsldg.tvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrs 253
            ++++                      +v++ +d+ +  +w lq     ++++r + +  ++vk    s  +++ + g++ g i  ++l+s
   Q: 365  RVKEEElklkpviafdcaeirerdwCNVVTCHMDTaQAYVWRLQnfviGEHILRPCPENLTPVKACTISACGNFAILGTAGGWIERFNLQS 455
           88877788888889889999999999********84699*****99998999*************************************** PP
   S: 254  gdllktlqlhn........ssvisvavlsfgdnvlvlgsedskvniwklk 295
           g   +++            s v+ va+ + ++  +++++  ++v++w++k
   Q: 456  GISRGSYMDVSergscaheSEVVGVAC-DSTNTQMISAGYHGDVKVWDFK 504
           99999988777788999999*******.999*****************97 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGIFEPFRAI GYITTGVPFS VQRLGTETFV TVSVGKAFQV YNCAKLTLVI VSPQLPHKIR 60
ALACYRDFTF VAYATHIAVF KRAHQVTLWS RHSAKVNSLM VFGDYVISVD VDGNLFIWGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTAAACTCA TAAAGCACAC CAAACCGACA CCGTTCTCCT TCGTTAAACT CAATTCAAAA 60
CCCTAATTCT CACTCCAGTC TCAATCTCTC TCCAAAGATG GGTATCTTCG AACCATTCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR011044--Quino_amine_DH_bsu
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

KEGG

pop:POPTR_0006s07850g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001096	Aegilops tauschii	72.41	0.00e+00	1305.00
IUUC-Aml-002289	Ailuropoda melanoleuca	35.62	9.00e-150	523.00
IUUC-Atr-002859	Amborella trichopoda	68.10	0.00e+00	1155.00
IUUC-Apl-003505	Anas platyrhynchos	38.80	4.00e-142	498.00
IUUC-Aca-004339	Anolis carolinensis	36.17	2.00e-147	516.00
IUUC-Aly-005913	Arabidopsis lyrata	75.88	0.00e+00	1389.00
IUUC-Ath-006767	Arabidopsis thaliana	75.66	0.00e+00	1389.00
IUUC-Ago-007763	Ashbya gossypii	31.35	5.00e-121	428.00
IUUC-Acl-008275	Aspergillus clavatus	31.05	2.00e-82	300.00
IUUC-Afl-008457	Aspergillus flavus	31.54	9.00e-78	284.00
IUUC-Afu-008914	Aspergillus fumigatus	28.99	2.00e-85	310.00
IUUC-Ani-009225	Aspergillus nidulans	31.36	3.00e-90	326.00
IUUC-Aor-010046	Aspergillus oryzae	30.33	1.00e-104	374.00
IUUC-Ate-010337	Aspergillus terreus	29.53	6.00e-96	345.00
IUUC-Ame-010963	Astyanax mexicanus	35.57	2.00e-144	505.00
IUUC-Bgr-011973	Blumeria graminis	28.63	2.00e-102	366.00
IUUC-Bta-012462	Bos taurus	36.08	2.00e-151	529.00
IUUC-Bci-013940	Botrytis cinerea	29.89	8.00e-118	417.00
IUUC-Bdi-014725	Brachypodium distachyon	72.62	0.00e+00	1327.00
IUUC-Bol-016534	Brassica oleracea	76.54	0.00e+00	1392.00
IUUC-Bra-016781	Brassica rapa	74.45	0.00e+00	1359.00
IUUC-Cel-018581	Caenorhabditis elegans	26.26	4.00e-79	289.00
IUUC-Cja-019675	Callithrix jacchus	34.53	5.00e-154	538.00
IUUC-Cfa-020118	Canis familiaris	35.99	8.00e-150	523.00
IUUC-Cpo-021798	Cavia porcellus	37.33	2.00e-149	522.00
IUUC-Cre-022566	Chlamydomonas reinhardtii	34.67	2.00e-48	186.00
IUUC-Csa-023547	Chlorocebus sabaeus	35.09	2.00e-144	505.00
IUUC-Cho-024518	Choloepus hoffmanni	31.58	2.00e-99	356.00
IUUC-Cin-025339	Ciona intestinalis	33.73	9.00e-146	510.00
IUUC-Cgl-026476	Colletotrichum gloeosporioides	28.86	3.00e-103	369.00
IUUC-Cne-026859	Cryptococcus neoformans	33.59	1.00e-134	473.00
IUUC-Cme-027173	Cyanidioschyzon merolae	28.28	6.00e-85	308.00
IUUC-Dre-027733	Danio rerio	35.28	7.00e-145	507.00
IUUC-Dno-029439	Dasypus novemcinctus	35.33	1.00e-145	509.00
IUUC-Dor-030329	Dipodomys ordii	33.47	3.00e-60	226.00
IUUC-Dse-031511	Dothistroma septosporum	29.38	1.00e-93	337.00
IUUC-Dme-031694	Drosophila melanogaster	33.30	4.00e-130	458.00
IUUC-Ete-032930	Echinops telfairi	39.50	3.00e-114	405.00
IUUC-Eca-033302	Equus caballus	36.33	1.00e-145	510.00
IUUC-Eeu-034516	Erinaceus europaeus	35.55	3.00e-154	538.00
IUUC-Fca-036064	Felis catus	35.77	4.00e-149	521.00
IUUC-Fal-037024	Ficedula albicollis	36.68	1.00e-155	543.00
IUUC-Fox-037787	Fusarium oxysporum	30.17	7.00e-95	341.00
IUUC-Fso-038378	Fusarium solani	29.57	4.00e-96	345.00
IUUC-Gmo-039637	Gadus morhua	35.98	4.00e-81	295.00
IUUC-Ggr-040108	Gaeumannomyces graminis	28.60	1.00e-94	341.00
IUUC-Gga-040982	Gallus gallus	35.78	7.00e-162	564.00
IUUC-Gac-041565	Gasterosteus aculeatus	34.90	3.00e-136	479.00
IUUC-Gma-043185	Glycine max	77.12	0.00e+00	1413.00
IUUC-Ggo-045463	Gorilla gorilla	34.71	8.00e-146	510.00
IUUC-Hsa-045675	Homo sapiens	34.79	5.00e-148	518.00
IUUC-Hvu-047352	Hordeum vulgare	72.92	0.00e+00	1220.00
IUUC-Itr-048088	Ictidomys tridecemlineatus	34.83	9.00e-158	550.00
IUUC-Kpa-049164	Komagataella pastoris	31.02	2.00e-113	403.00
IUUC-Lch-050476	Latimeria chalumnae	35.36	2.00e-156	545.00
IUUC-Lpe-051556	Leersia perrieri	56.13	0.00e+00	934.00
IUUC-Loc-052820	Lepisosteus oculatus	35.82	2.00e-151	529.00
IUUC-Lma-052961	Leptosphaeria maculans	29.16	3.00e-93	336.00
IUUC-Laf-054006	Loxodonta africana	34.89	5.00e-142	498.00
IUUC-Mcc-055037	Macaca mulatta	34.74	3.00e-146	512.00
IUUC-Mor-057280	Magnaporthe oryzae	29.29	5.00e-99	355.00
IUUC-Mpo-057408	Magnaporthe poae	29.20	2.00e-93	337.00
IUUC-Mtr-058473	Medicago truncatula	76.97	0.00e+00	1415.00
IUUC-Mla-058892	Melampsora laricipopulina	33.85	7.00e-111	394.00
IUUC-Mga-059598	Meleagris gallopavo	31.58	6.00e-111	394.00
IUUC-Mvi-060334	Microbotryum violaceum	33.54	3.00e-111	395.00
IUUC-Mmr-061239	Microcebus murinus	35.29	4.00e-145	508.00
IUUC-Mdo-062471	Monodelphis domestica	35.90	1.00e-142	499.00
IUUC-Mmu-063872	Mus musculus	36.85	2.00e-156	545.00
IUUC-Mac-064631	Musa acuminata	73.64	0.00e+00	1214.00
IUUC-Mpu-066039	Mustela putorius furo	36.05	2.00e-160	559.00
IUUC-Mlu-067485	Myotis lucifugus	35.58	2.00e-147	516.00
IUUC-Nfi-068319	Neosartorya fischeri	28.77	2.00e-94	340.00
IUUC-Ncr-068725	Neurospora crassa	30.06	2.00e-98	353.00
IUUC-Nle-069050	Nomascus leucogenys	35.04	8.00e-147	514.00
IUUC-Opr-070437	Ochotona princeps	41.40	2.00e-46	180.00
IUUC-Ont-071574	Oreochromis niloticus	35.29	3.00e-143	501.00
IUUC-Oan-072826	Ornithorhynchus anatinus	37.57	2.00e-157	549.00
IUUC-Ocu-073995	Oryctolagus cuniculus	36.92	2.00e-143	503.00
IUUC-Obr-076451	Oryza brachyantha	73.00	0.00e+00	1363.00
IUUC-Ogl-077535	Oryza glaberrima	72.05	0.00e+00	1317.00
IUUC-Ogu-077995	Oryza glumaepatula	60.32	0.00e+00	1027.00
IUUC-Oin-079431	Oryza indica	72.67	0.00e+00	1326.00
IUUC-Olo-080495	Oryza longistaminata	63.53	0.00e+00	1069.00
IUUC-Oni-082336	Oryza nivara	69.59	0.00e+00	1239.00
IUUC-Opu-084028	Oryza punctata	65.83	0.00e+00	1098.00
IUUC-Osa-086242	Oryza sativa	72.62	0.00e+00	1326.00
IUUC-Ola-086612	Oryzias latipes	34.61	2.00e-114	406.00
IUUC-Olu-087703	Ostreococcus lucimarinus	36.66	5.00e-156	544.00
IUUC-Oga-088572	Otolemur garnettii	36.54	2.00e-149	523.00
IUUC-Oar-090363	Ovis aries	36.31	5.00e-153	534.00
IUUC-Ptr-090477	Pan troglodytes	34.90	2.00e-146	512.00
IUUC-Pan-092914	Papio anubis	34.74	2.00e-147	516.00
IUUC-Psi-093019	Pelodiscus sinensis	34.77	4.00e-144	504.00
IUUC-Pma-094303	Petromyzon marinus	35.38	7.00e-121	427.00
IUUC-Pno-094938	Phaeosphaeria nodorum	29.43	1.00e-89	324.00
IUUC-Ppa-095720	Physcomitrella patens	55.74	0.00e+00	996.00
IUUC-Pfo-097034	Poecilia formosa	33.77	5.00e-132	464.00
IUUC-Pab-097669	Pongo abelii	34.85	3.00e-147	515.00
IUUC-Pca-101097	Procavia capensis	39.11	6.00e-61	228.00
IUUC-Ppe-101430	Prunus persica	79.56	0.00e+00	1482.00
IUUC-Pva-103152	Pteropus vampyrus	35.86	3.00e-151	528.00
IUUC-Pgr-103517	Puccinia graminis	31.31	2.00e-127	449.00
IUUC-Ptt-103697	Puccinia triticina	30.71	1.00e-99	357.00
IUUC-Pte-104121	Pyrenophora teres	28.64	4.00e-95	342.00
IUUC-Pyt-104672	Pyrenophora triticirepentis	28.85	4.00e-94	338.00
IUUC-Rno-105435	Rattus norvegicus	36.13	2.00e-151	529.00
IUUC-Sce-106202	Saccharomyces cerevisiae	32.20	3.00e-111	395.00
IUUC-Sha-107272	Sarcophilus harrisii	37.40	2.00e-138	485.00
IUUC-Sja-107744	Schizosaccharomyces japonicus	36.45	1.00e-154	540.00
IUUC-Spo-108256	Schizosaccharomyces pombe	37.12	1.00e-160	560.00
IUUC-Ssl-108618	Sclerotinia sclerotiorum	29.87	2.00e-113	403.00
IUUC-Smo-108762	Selaginella moellendorffii	55.92	0.00e+00	1015.00
IUUC-Sit-110051	Setaria italica	73.00	0.00e+00	1330.00
IUUC-Sly-111181	Solanum lycopersicum	75.99	0.00e+00	1377.00
IUUC-Stu-112018	Solanum tuberosum	76.32	0.00e+00	1382.00
IUUC-Sar-113348	Sorex araneus	34.85	3.00e-101	362.00
IUUC-Sbi-114282	Sorghum bicolor	72.45	0.00e+00	1355.00
IUUC-Sre-114946	Sporisorium reilianum	31.23	2.00e-86	313.00
IUUC-Ssc-115287	Sus scrofa	36.06	5.00e-152	531.00
IUUC-Tgu-117138	Taeniopygia guttata	35.09	2.00e-125	442.00
IUUC-Tru-118232	Takifugu rubripes	34.35	2.00e-135	476.00
IUUC-Tsy-119502	Tarsius syrichta	28.34	1.00e-98	354.00
IUUC-Tni-120378	Tetraodon nigroviridis	37.01	1.00e-141	496.00
IUUC-Tca-121506	Theobroma cacao	81.23	0.00e+00	1469.00
IUUC-Tre-122166	Trichoderma reesei	29.50	3.00e-103	369.00
IUUC-Tvi-122385	Trichoderma virens	29.68	3.00e-104	373.00
IUUC-Tae-122836	Triticum aestivum	72.79	0.00e+00	1385.00
IUUC-Tur-126490	Triticum urartu	62.59	0.00e+00	1068.00
IUUC-Tme-127157	Tuber melanosporum	32.49	1.00e-112	400.00
IUUC-Tbe-127981	Tupaia belangeri	38.46	7.00e-132	464.00
IUUC-Ttr-128886	Tursiops truncatus	35.40	1.00e-146	513.00
IUUC-Uma-129439	Ustilago maydis	30.58	7.00e-89	322.00
IUUC-Vda-129760	Verticillium dahliae	29.95	4.00e-108	385.00
IUUC-Vpa-130456	Vicugna pacos	35.55	1.00e-148	520.00
IUUC-Vvi-131086	Vitis vinifera	79.23	0.00e+00	1480.00
IUUC-Xtr-131829	Xenopus tropicalis	37.16	8.00e-165	573.00
IUUC-Xma-133588	Xiphophorus maculatus	34.09	9.00e-132	464.00
IUUC-Yli-134328	Yarrowia lipolytica	30.69	6.00e-105	375.00
IUUC-Zma-135808	Zea mays	71.12	0.00e+00	1333.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence