iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049147

Ensembl Protein ID

CAY71308

UniProt Accession

C4R6T3; C4R6T3_KOMPG

Genbank Protein ID

CAY71308.1

Protein Name

Essential protein involved in a late step of 60S ribosomal subunit assembly or modification

Genbank Nucleotide ID

FN392322

Gene Name

PAS_chr4_0082

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr4_0082	CAY71308	CAY71308

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.90e-15	52.4	74	110

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvl 35
           +H+ds++ + f  ++ +l+v+G++D t ++W ++t+v+
   Q: 74   THKDSIFTV-FthPTlPLVVTGGGDDTAYLWTTHTQVP 110
           5********.*999999**************9999876 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MSEPIRDPEI EQPAAEEEGE YVTINEVDEI VPEDENDAEP IEDDDEDESH DLSVNQEGNI 60
ELDLSNNSRT FFDTHKDSIF TVFTHPTLPL VVTGGGDDTA YLWTTHTQVP KVVTELEGHK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTGAAC CGATTAGAGA CCCAGAGATA GAGCAACCTG CTGCTGAGGA GGAAGGGGAG 60
TACGTTACAA TTAATGAGGT TGATGAGATT GTGCCGGAAG ATGAGAACGA TGCTGAACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0022626--C:cytosolic ribosome
GO:0000027--P:ribosomal large subunit assembly

KEGG

ppa:PAS_chr4_0082

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001781	Ailuropoda melanoleuca	25.75	2.00e-25	107.00
IUUC-Atr-003169	Amborella trichopoda	25.21	1.00e-24	105.00
IUUC-Aca-004594	Anolis carolinensis	25.14	4.00e-26	110.00
IUUC-Aly-006277	Arabidopsis lyrata	27.17	5.00e-23	99.80
IUUC-Ath-007701	Arabidopsis thaliana	26.40	5.00e-24	103.00
IUUC-Ago-007790	Ashbya gossypii	48.67	2.00e-91	327.00
IUUC-Acl-008079	Aspergillus clavatus	28.84	3.00e-14	70.90
IUUC-Afl-008588	Aspergillus flavus	27.92	4.00e-26	110.00
IUUC-Afu-009093	Aspergillus fumigatus	28.35	9.00e-16	76.30
IUUC-Ani-009179	Aspergillus nidulans	30.49	1.00e-16	79.00
IUUC-Aor-010024	Aspergillus oryzae	27.92	4.00e-26	110.00
IUUC-Ate-010448	Aspergillus terreus	26.51	3.00e-27	114.00
IUUC-Ame-011651	Astyanax mexicanus	25.75	1.00e-21	95.50
IUUC-Bgr-012118	Blumeria graminis	28.23	5.00e-26	110.00
IUUC-Bta-012833	Bos taurus	25.20	3.00e-24	103.00
IUUC-Bci-013724	Botrytis cinerea	30.14	4.00e-22	97.10
IUUC-Bol-015313	Brassica oleracea	25.14	1.00e-22	98.60
IUUC-Bra-017115	Brassica rapa	26.36	1.00e-17	82.00
IUUC-Cel-018305	Caenorhabditis elegans	22.42	2.00e-13	67.80
IUUC-Cja-019433	Callithrix jacchus	25.20	3.00e-24	103.00
IUUC-Cfa-020093	Canis familiaris	25.20	5.00e-25	106.00
IUUC-Cpo-021742	Cavia porcellus	25.20	2.00e-24	104.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	25.40	4.00e-20	90.50
IUUC-Csa-023608	Chlorocebus sabaeus	24.39	3.00e-24	103.00
IUUC-Cin-025244	Ciona intestinalis	22.76	5.00e-19	86.30
IUUC-Csv-026218	Ciona savignyi	26.24	6.00e-21	92.40
IUUC-Cne-026826	Cryptococcus neoformans	24.87	2.00e-17	81.60
IUUC-Cme-027317	Cyanidioschyzon merolae	23.12	6.00e-06	43.10
IUUC-Dre-028528	Danio rerio	26.80	8.00e-27	112.00
IUUC-Dno-029297	Dasypus novemcinctus	24.93	4.00e-24	103.00
IUUC-Dor-030543	Dipodomys ordii	32.97	5.00e-10	55.80
IUUC-Dse-031205	Dothistroma septosporum	28.10	6.00e-23	100.00
IUUC-Dme-031587	Drosophila melanogaster	24.46	5.00e-19	86.70
IUUC-Eca-034277	Equus caballus	24.39	1.00e-24	105.00
IUUC-Fca-036115	Felis catus	25.47	2.00e-25	107.00
IUUC-Fal-036864	Ficedula albicollis	24.10	3.00e-28	117.00
IUUC-Fox-037970	Fusarium oxysporum	26.51	9.00e-17	79.30
IUUC-Fso-038432	Fusarium solani	25.80	8.00e-15	72.80
IUUC-Ggr-040066	Gaeumannomyces graminis	25.75	5.00e-15	73.60
IUUC-Gga-040545	Gallus gallus	24.10	2.00e-28	117.00
IUUC-Gac-042027	Gasterosteus aculeatus	25.14	1.00e-26	111.00
IUUC-Gma-044168	Glycine max	26.54	3.00e-24	103.00
IUUC-Ggo-045036	Gorilla gorilla	25.20	3.00e-24	103.00
IUUC-Hsa-046749	Homo sapiens	25.20	3.00e-24	103.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	25.20	2.00e-24	104.00
IUUC-Lch-049747	Latimeria chalumnae	23.93	4.00e-19	87.00
IUUC-Loc-052406	Lepisosteus oculatus	25.84	1.00e-25	108.00
IUUC-Lma-053153	Leptosphaeria maculans	26.09	7.00e-22	96.30
IUUC-Laf-053901	Loxodonta africana	25.47	2.00e-24	104.00
IUUC-Mcc-054990	Macaca mulatta	24.39	4.00e-24	103.00
IUUC-Meu-056844	Macropus eugenii	26.26	5.00e-27	113.00
IUUC-Mor-056975	Magnaporthe oryzae	25.59	5.00e-17	80.10
IUUC-Mpo-057307	Magnaporthe poae	34.02	6.00e-07	45.40
IUUC-Mla-058856	Melampsora laricipopulina	27.72	3.00e-26	110.00
IUUC-Mga-059749	Meleagris gallopavo	23.55	1.00e-26	112.00
IUUC-Mvi-060237	Microbotryum violaceum	29.86	2.00e-30	124.00
IUUC-Mmr-061270	Microcebus murinus	24.29	3.00e-21	94.00
IUUC-Mdo-062965	Monodelphis domestica	26.54	7.00e-28	115.00
IUUC-Mmu-064081	Mus musculus	25.20	2.00e-24	104.00
IUUC-Mac-065236	Musa acuminata	26.88	2.00e-22	97.40
IUUC-Mpu-066355	Mustela putorius furo	25.20	4.00e-25	106.00
IUUC-Mlu-067630	Myotis lucifugus	25.20	7.00e-24	102.00
IUUC-Nfi-068543	Neosartorya fischeri	29.91	8.00e-16	76.30
IUUC-Ncr-068720	Neurospora crassa	24.84	3.00e-14	71.20
IUUC-Nle-069701	Nomascus leucogenys	25.20	3.00e-24	103.00
IUUC-Opr-070337	Ochotona princeps	22.70	9.00e-18	82.40
IUUC-Ont-072614	Oreochromis niloticus	26.27	2.00e-27	114.00
IUUC-Ocu-073912	Oryctolagus cuniculus	25.20	2.00e-24	104.00
IUUC-Ola-087164	Oryzias latipes	26.07	6.00e-27	112.00
IUUC-Oga-088864	Otolemur garnettii	25.20	2.00e-24	104.00
IUUC-Oar-090115	Ovis aries	25.20	4.00e-24	103.00
IUUC-Ptr-091398	Pan troglodytes	25.20	4.00e-24	103.00
IUUC-Pan-092002	Papio anubis	25.20	3.00e-24	103.00
IUUC-Pma-094618	Petromyzon marinus	24.06	2.00e-22	97.40
IUUC-Pno-095088	Phaeosphaeria nodorum	31.11	2.00e-23	103.00
IUUC-Ppa-095351	Physcomitrella patens	27.12	3.00e-30	124.00
IUUC-Pfo-097078	Poecilia formosa	26.65	1.00e-27	115.00
IUUC-Pab-098540	Pongo abelii	25.20	3.00e-24	103.00
IUUC-Pop-099761	Populus trichocarpa	27.93	1.00e-23	101.00
IUUC-Pca-101072	Procavia capensis	25.14	3.00e-21	94.00
IUUC-Pva-102400	Pteropus vampyrus	21.69	7.00e-12	63.20
IUUC-Pgr-103362	Puccinia graminis	27.15	3.00e-28	117.00
IUUC-Ptt-103756	Puccinia triticina	27.53	1.00e-18	85.10
IUUC-Pte-104401	Pyrenophora teres	25.70	2.00e-19	88.60
IUUC-Pyt-104510	Pyrenophora triticirepentis	24.95	1.00e-17	82.40
IUUC-Rno-105672	Rattus norvegicus	25.20	1.00e-24	105.00
IUUC-Sce-106242	Saccharomyces cerevisiae	47.79	1.00e-92	331.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	30.49	3.00e-34	137.00
IUUC-Spo-108208	Schizosaccharomyces pombe	29.29	1.00e-38	151.00
IUUC-Smo-109093	Selaginella moellendorffii	28.77	3.00e-27	114.00
IUUC-Sre-115029	Sporisorium reilianum	29.26	2.00e-33	134.00
IUUC-Tgu-117514	Taeniopygia guttata	24.65	2.00e-29	120.00
IUUC-Tru-117851	Takifugu rubripes	24.86	1.00e-27	115.00
IUUC-Tni-120248	Tetraodon nigroviridis	25.72	2.00e-27	114.00
IUUC-Tre-122058	Trichoderma reesei	26.48	2.00e-18	84.70
IUUC-Tvi-122350	Trichoderma virens	25.43	1.00e-17	82.00
IUUC-Tme-127079	Tuber melanosporum	35.38	2.00e-24	105.00
IUUC-Ttr-128182	Tursiops truncatus	24.66	7.00e-23	99.40
IUUC-Uma-129624	Ustilago maydis	29.34	6.00e-34	136.00
IUUC-Vda-129787	Verticillium dahliae	25.90	1.00e-17	82.40
IUUC-Vpa-130605	Vicugna pacos	21.41	2.00e-11	60.80
IUUC-Vvi-131319	Vitis vinifera	25.83	5.00e-25	106.00
IUUC-Xtr-132193	Xenopus tropicalis	25.14	1.00e-27	115.00
IUUC-Xma-133880	Xiphophorus maculatus	26.36	2.00e-27	114.00
IUUC-Yli-134520	Yarrowia lipolytica	44.23	4.00e-87	312.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence