iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	PINA
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-42	141.0	101	131
UBD/Beta-Prp	1.20e-74	251.5	33	214

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+  v+c++f sd  l+++G+ Dg+i +WD
   Q: 101  GHKKAVNCIEFsSDgLLFATGGKDGVIVLWD 131
           89**********997889************* PP

UBD/Beta-Prp

   S: 67   lvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlk 167
            v +s  + ++ ++++t + v  + + ++ + +++ ++++  l++G +d  +++++ e++     ++sgh+++vnc+++++dg l+++G++D+++ lWd+ 
   Q: 33   TVAVSANEYLNFYNMRTAEKVNEIIESTKPISCVRQCENKPLLAIGYADGSVKLFNQENEDSEPIMFSGHKKAVNCIEFSSDGLLFATGGKDGVIVLWDIL 133
           5777888889999***************************************************9************************************ PP
   S: 168  tgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
            ++ + +l g h++sv+ ++f +  ++++s s+d+ +k+w++ +++c +t+ + ++ ++s+ ++++++ lv ++++  + ++
   Q: 134  AERGMFRLHG-HKESVTQMKFVRGDRFIISTSKDSLIKFWSIASQSCFYTVMDSRNEIYSMSLHRDETVLVAATAELELLVF 214
           *********9.************************************************************99998877776 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MGLTKDYLKY EHAGSCGCVG SANGQLVAID GQTVAVSANE YLNFYNMRTA EKVNEIIEST 60
KPISCVRQCE NKPLLAIGYA DGSVKLFNQE NEDSEPIMFS GHKKAVNCIE FSSDGLLFAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGATTGA CCAAGGATTA TTTGAAATAT GAACATGCCG GCTCCTGTGG GTGCGTTGGA 60
TCTGCCAACG GCCAACTTGT TGCGATTGAT GGACAAACCG TTGCTGTATC GGCAAATGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cel:CELE_F13H8.2

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	33.13	1.00e-92	332.00
IUUC-Aml-001245	Ailuropoda melanoleuca	34.15	8.00e-141	493.00
IUUC-Atr-002700	Amborella trichopoda	30.53	6.00e-99	354.00
IUUC-Apl-004164	Anas platyrhynchos	35.24	1.00e-106	379.00
IUUC-Aca-004765	Anolis carolinensis	34.04	4.00e-138	484.00
IUUC-Aly-006503	Arabidopsis lyrata	28.49	8.00e-100	357.00
IUUC-Ath-006848	Arabidopsis thaliana	29.63	9.00e-99	353.00
IUUC-Ago-007909	Ashbya gossypii	27.86	3.00e-94	338.00
IUUC-Acl-008238	Aspergillus clavatus	31.08	1.00e-112	399.00
IUUC-Afl-008544	Aspergillus flavus	29.92	8.00e-108	383.00
IUUC-Afu-008868	Aspergillus fumigatus	30.02	3.00e-109	388.00
IUUC-Ani-009367	Aspergillus nidulans	31.12	3.00e-98	352.00
IUUC-Ang-009732	Aspergillus niger	29.99	9.00e-111	393.00
IUUC-Aor-010140	Aspergillus oryzae	29.99	1.00e-108	386.00
IUUC-Ate-010572	Aspergillus terreus	30.22	7.00e-106	377.00
IUUC-Ame-010956	Astyanax mexicanus	39.74	1.00e-97	349.00
IUUC-Bgr-012296	Blumeria graminis	27.61	3.00e-103	368.00
IUUC-Bta-012716	Bos taurus	34.26	1.00e-139	489.00
IUUC-Bci-013699	Botrytis cinerea	28.63	3.00e-101	362.00
IUUC-Bdi-014525	Brachypodium distachyon	33.13	3.00e-96	345.00
IUUC-Bol-015117	Brassica oleracea	33.52	2.00e-72	266.00
IUUC-Bra-016869	Brassica rapa	33.52	8.00e-72	264.00
IUUC-Cja-019425	Callithrix jacchus	34.61	1.00e-137	483.00
IUUC-Cfa-020787	Canis familiaris	34.37	3.00e-142	498.00
IUUC-Cpo-021729	Cavia porcellus	35.18	2.00e-100	358.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	34.80	6.00e-58	218.00
IUUC-Csa-024098	Chlorocebus sabaeus	33.94	2.00e-138	485.00
IUUC-Cho-024495	Choloepus hoffmanni	30.40	3.00e-60	225.00
IUUC-Cin-025245	Ciona intestinalis	31.09	4.00e-87	314.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	28.39	1.00e-102	366.00
IUUC-Cne-026835	Cryptococcus neoformans	33.96	4.00e-70	258.00
IUUC-Cme-027162	Cyanidioschyzon merolae	35.11	1.00e-29	124.00
IUUC-Dre-027874	Danio rerio	34.98	1.00e-141	496.00
IUUC-Dno-028905	Dasypus novemcinctus	35.18	2.00e-144	505.00
IUUC-Dor-030383	Dipodomys ordii	38.94	2.00e-53	202.00
IUUC-Dse-031297	Dothistroma septosporum	28.17	5.00e-101	361.00
IUUC-Dme-031956	Drosophila melanogaster	32.33	3.00e-119	421.00
IUUC-Ete-032608	Echinops telfairi	32.20	2.00e-70	258.00
IUUC-Eca-034181	Equus caballus	35.01	4.00e-141	494.00
IUUC-Eeu-034495	Erinaceus europaeus	34.62	3.00e-137	481.00
IUUC-Fca-035994	Felis catus	34.50	3.00e-131	461.00
IUUC-Fal-036611	Ficedula albicollis	34.90	2.00e-132	465.00
IUUC-Fox-037807	Fusarium oxysporum	29.69	5.00e-107	380.00
IUUC-Fso-038090	Fusarium solani	29.63	4.00e-106	377.00
IUUC-Gmo-039018	Gadus morhua	31.53	1.00e-70	259.00
IUUC-Ggr-039748	Gaeumannomyces graminis	28.73	4.00e-105	374.00
IUUC-Gga-040707	Gallus gallus	33.94	8.00e-134	469.00
IUUC-Gac-042334	Gasterosteus aculeatus	31.17	3.00e-63	235.00
IUUC-Gma-043860	Glycine max	33.59	2.00e-69	256.00
IUUC-Ggo-045334	Gorilla gorilla	33.76	4.00e-135	474.00
IUUC-Hsa-046996	Homo sapiens	33.62	3.00e-136	478.00
IUUC-Hvu-047381	Hordeum vulgare	30.74	2.00e-51	196.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	33.37	2.00e-135	475.00
IUUC-Kpa-049185	Komagataella pastoris	25.98	3.00e-80	291.00
IUUC-Lch-050098	Latimeria chalumnae	32.46	8.00e-106	377.00
IUUC-Lpe-050710	Leersia perrieri	33.69	3.00e-96	345.00
IUUC-Loc-052745	Lepisosteus oculatus	41.56	9.00e-93	333.00
IUUC-Lma-053104	Leptosphaeria maculans	29.91	1.00e-106	380.00
IUUC-Laf-054395	Loxodonta africana	34.26	6.00e-139	487.00
IUUC-Mcc-055077	Macaca mulatta	33.94	2.00e-138	485.00
IUUC-Meu-056418	Macropus eugenii	37.67	1.00e-78	286.00
IUUC-Mor-057031	Magnaporthe oryzae	27.69	2.00e-88	319.00
IUUC-Mpo-057420	Magnaporthe poae	29.43	3.00e-102	365.00
IUUC-Mtr-057838	Medicago truncatula	28.86	1.00e-103	369.00
IUUC-Mla-058854	Melampsora laricipopulina	42.21	7.00e-65	241.00
IUUC-Mga-060120	Meleagris gallopavo	33.37	7.00e-120	423.00
IUUC-Mvi-060407	Microbotryum violaceum	33.22	4.00e-79	288.00
IUUC-Mmr-060635	Microcebus murinus	33.98	7.00e-136	476.00
IUUC-Mdo-063023	Monodelphis domestica	33.01	1.00e-139	489.00
IUUC-Mmu-064103	Mus musculus	33.94	1.00e-141	495.00
IUUC-Mac-065569	Musa acuminata	28.46	6.00e-94	337.00
IUUC-Mpu-066462	Mustela putorius furo	34.22	6.00e-143	500.00
IUUC-Mlu-067894	Myotis lucifugus	34.58	8.00e-141	493.00
IUUC-Nfi-068321	Neosartorya fischeri	30.10	3.00e-109	388.00
IUUC-Ncr-068661	Neurospora crassa	33.79	1.00e-75	276.00
IUUC-Nle-069409	Nomascus leucogenys	33.94	3.00e-137	481.00
IUUC-Opr-070445	Ochotona princeps	38.48	5.00e-91	327.00
IUUC-Ont-072339	Oreochromis niloticus	35.40	6.00e-143	500.00
IUUC-Oan-073688	Ornithorhynchus anatinus	35.23	6.00e-140	490.00
IUUC-Ocu-074227	Oryctolagus cuniculus	34.69	1.00e-142	499.00
IUUC-Oba-075635	Oryza barthii	30.69	5.00e-92	331.00
IUUC-Obr-076897	Oryza brachyantha	32.29	1.00e-98	352.00
IUUC-Ogl-077555	Oryza glaberrima	30.58	1.00e-91	330.00
IUUC-Ogu-078724	Oryza glumaepatula	30.98	6.00e-93	334.00
IUUC-Oin-080030	Oryza indica	30.80	6.00e-93	334.00
IUUC-Olo-080687	Oryza longistaminata	31.83	1.00e-84	306.00
IUUC-Ome-081867	Oryza meridionalis	34.05	6.00e-93	334.00
IUUC-Oni-082559	Oryza nivara	30.80	3.00e-93	335.00
IUUC-Opu-083332	Oryza punctata	33.80	5.00e-93	334.00
IUUC-Oru-084455	Oryza rufipogon	30.69	2.00e-92	332.00
IUUC-Osa-085793	Oryza sativa	30.69	2.00e-92	332.00
IUUC-Ola-087395	Oryzias latipes	34.57	5.00e-132	464.00
IUUC-Olu-087768	Ostreococcus lucimarinus	32.94	8.00e-74	270.00
IUUC-Oga-088574	Otolemur garnettii	34.36	2.00e-138	485.00
IUUC-Oar-089453	Ovis aries	33.87	1.00e-139	489.00
IUUC-Ptr-090694	Pan troglodytes	33.83	3.00e-136	478.00
IUUC-Pan-092420	Papio anubis	33.55	2.00e-136	478.00
IUUC-Psi-093683	Pelodiscus sinensis	34.66	2.00e-139	488.00
IUUC-Pma-094197	Petromyzon marinus	31.17	1.00e-27	114.00
IUUC-Pno-094783	Phaeosphaeria nodorum	29.20	4.00e-106	378.00
IUUC-Ppa-095208	Physcomitrella patens	34.47	8.00e-69	254.00
IUUC-Pfo-096299	Poecilia formosa	35.25	3.00e-146	511.00
IUUC-Pab-098706	Pongo abelii	33.66	5.00e-136	477.00
IUUC-Pop-099275	Populus trichocarpa	28.39	3.00e-93	335.00
IUUC-Pca-100796	Procavia capensis	27.85	1.00e-80	293.00
IUUC-Ppe-101861	Prunus persica	29.41	3.00e-90	325.00
IUUC-Pva-103241	Pteropus vampyrus	33.07	2.00e-123	435.00
IUUC-Pgr-103432	Puccinia graminis	33.27	5.00e-74	271.00
IUUC-Ptt-103742	Puccinia triticina	38.82	1.00e-58	220.00
IUUC-Pte-104069	Pyrenophora teres	30.73	5.00e-103	367.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	30.24	3.00e-106	378.00
IUUC-Rno-105219	Rattus norvegicus	34.04	1.00e-137	483.00
IUUC-Sce-106271	Saccharomyces cerevisiae	27.20	1.00e-90	327.00
IUUC-Sha-107550	Sarcophilus harrisii	33.16	4.00e-139	488.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	27.94	5.00e-97	347.00
IUUC-Spo-108239	Schizosaccharomyces pombe	27.87	8.00e-100	357.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	29.27	2.00e-109	388.00
IUUC-Smo-109477	Selaginella moellendorffii	29.26	7.00e-96	343.00
IUUC-Sit-110000	Setaria italica	30.86	3.00e-93	335.00
IUUC-Sly-111595	Solanum lycopersicum	32.05	1.00e-68	253.00
IUUC-Stu-112516	Solanum tuberosum	32.05	1.00e-67	250.00
IUUC-Sar-113195	Sorex araneus	39.73	3.00e-86	311.00
IUUC-Sbi-114465	Sorghum bicolor	31.83	8.00e-96	343.00
IUUC-Sre-115006	Sporisorium reilianum	39.65	4.00e-64	238.00
IUUC-Ssc-115929	Sus scrofa	34.59	7.00e-140	490.00
IUUC-Tgu-117282	Taeniopygia guttata	35.44	2.00e-132	465.00
IUUC-Tru-118406	Takifugu rubripes	35.50	3.00e-142	498.00
IUUC-Tsy-119170	Tarsius syrichta	34.19	1.00e-138	485.00
IUUC-Tni-119721	Tetraodon nigroviridis	34.41	3.00e-130	458.00
IUUC-Tca-121761	Theobroma cacao	28.22	4.00e-100	358.00
IUUC-Tre-121908	Trichoderma reesei	28.15	4.00e-97	348.00
IUUC-Tvi-122547	Trichoderma virens	28.86	1.00e-100	360.00
IUUC-Tae-125433	Triticum aestivum	34.93	7.00e-97	347.00
IUUC-Tur-126811	Triticum urartu	33.07	8.00e-98	350.00
IUUC-Tme-126987	Tuber melanosporum	29.94	2.00e-111	395.00
IUUC-Tbe-127315	Tupaia belangeri	39.65	4.00e-84	305.00
IUUC-Ttr-129165	Tursiops truncatus	42.65	3.00e-56	212.00
IUUC-Uma-129651	Ustilago maydis	31.45	8.00e-95	340.00
IUUC-Vda-129973	Verticillium dahliae	29.42	4.00e-100	358.00
IUUC-Vpa-130163	Vicugna pacos	37.34	7.00e-44	171.00
IUUC-Vvi-131402	Vitis vinifera	30.11	3.00e-65	242.00
IUUC-Xtr-132296	Xenopus tropicalis	35.72	8.00e-141	493.00
IUUC-Xma-133028	Xiphophorus maculatus	35.14	5.00e-144	503.00
IUUC-Yli-134484	Yarrowia lipolytica	31.97	3.00e-87	315.00
IUUC-Zma-135938	Zea mays	31.49	1.00e-95	343.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence