iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006806

Ensembl Protein ID

AT5G50970.1

UniProt Accession

Q683G3; Q683G3_ARATH

Genbank Protein ID

AED96018.1; BAD42917.1

Protein Name

Transducin family protein / WD-40 repeat family protein; mRNA, clone: RAFL21-57-G12

Genbank Nucleotide ID

CP002688; AK175154

Gene Name

At5g50970; K3K7.13; K3K7_13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G50970	AT5G50970.1	AT5G50970.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-13	50.0	195	232

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtgvll 36
           H+ + ++l +   ++ l++++s Dg + +W l  g+l+
   Q: 195  HKRKLRSLILcpvNEQLFATSSLDGMVSLWQLQPGRLV 232
           8888999877886669***************9888776 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI 60
EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV NVSEDYASPS PSKTLRPSDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCAATGGGAG CTTGTATCTC CCACGTGAGA GAGTCTCTGT AACAAAAACA AAAAAAAATA 60
GCACAATTTT TGTCGAAATA AAAGAGACGA TCAGATCCCA TTTTGTCGTT GGCAAAAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT5G50970

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000679	Aegilops tauschii	56.57	1.00e-132	466.00
IUUC-Atr-002878	Amborella trichopoda	60.61	2.00e-132	464.00
IUUC-Aly-006473	Arabidopsis lyrata	95.90	0.00e+00	931.00
IUUC-Bdi-014216	Brachypodium distachyon	61.21	5.00e-130	457.00
IUUC-Bol-015463	Brassica oleracea	81.62	0.00e+00	817.00
IUUC-Bra-017074	Brassica rapa	79.92	0.00e+00	830.00
IUUC-Gma-042665	Glycine max	60.99	1.00e-180	625.00
IUUC-Hvu-047292	Hordeum vulgare	65.23	2.00e-112	397.00
IUUC-Lpe-051627	Leersia perrieri	51.26	7.00e-138	483.00
IUUC-Mpo-057521	Magnaporthe poae	31.19	2.00e-05	43.50
IUUC-Mtr-058789	Medicago truncatula	60.80	5.00e-161	560.00
IUUC-Mac-065472	Musa acuminata	56.45	7.00e-163	566.00
IUUC-Oba-074995	Oryza barthii	60.64	7.00e-135	473.00
IUUC-Obr-076006	Oryza brachyantha	52.31	3.00e-141	494.00
IUUC-Ogl-077176	Oryza glaberrima	52.06	1.00e-139	489.00
IUUC-Ogu-078267	Oryza glumaepatula	51.96	8.00e-139	486.00
IUUC-Oin-079742	Oryza indica	63.76	3.00e-138	484.00
IUUC-Olo-080890	Oryza longistaminata	60.92	2.00e-125	441.00
IUUC-Ome-081454	Oryza meridionalis	52.06	1.00e-139	488.00
IUUC-Oni-083009	Oryza nivara	50.50	4.00e-136	477.00
IUUC-Opu-083781	Oryza punctata	63.71	1.00e-135	475.00
IUUC-Oru-084517	Oryza rufipogon	50.50	4.00e-136	477.00
IUUC-Osa-085484	Oryza sativa	63.76	2.00e-138	484.00
IUUC-Ppa-095859	Physcomitrella patens	45.35	1.00e-112	399.00
IUUC-Pop-099647	Populus trichocarpa	63.48	2.00e-177	614.00
IUUC-Ppe-101833	Prunus persica	59.34	5.00e-175	606.00
IUUC-Smo-109063	Selaginella moellendorffii	37.27	1.00e-43	169.00
IUUC-Sit-109887	Setaria italica	63.35	5.00e-136	477.00
IUUC-Sly-111601	Solanum lycopersicum	53.86	1.00e-165	575.00
IUUC-Stu-112708	Solanum tuberosum	60.58	9.00e-148	516.00
IUUC-Sbi-114727	Sorghum bicolor	62.50	8.00e-134	469.00
IUUC-Tca-121644	Theobroma cacao	62.20	5.00e-171	593.00
IUUC-Tae-125240	Triticum aestivum	62.85	2.00e-139	488.00
IUUC-Vvi-131460	Vitis vinifera	63.10	2.00e-173	601.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence