iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006078

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitin-specific protease 6

Genbank Nucleotide ID

GL348713

Gene Name

UBP6; ARALYDRAFT_892148

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_104942.1	scaffold_104942.1	scaffold_104942.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.40e-61	208.5	105	477
ULD/UDP/UBQ/UBQ_Other	6.80e-09	36.2	26	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefs.....gye 88
           Gl NlgNtCYmNS++QcL ++pel+++l + ++ + + ++ ++++  l+ + ++lf el +++ +avsp++++ +l+k+ ++fs       +
   Q: 105  GLVNLGNTCYMNSTVQCLKSVPELKSALSN-YSLAARSNDVDQTSHMLTVATRELFGEL-DRSVNAVSPTQFWMVLRKKYPQFSqlqngMHM 194
           9*****************************.99999999999*****************.99**********************9999889* PP
   S: 89   qqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgke 180
           qqDa+E++++ll +l+++l                       +  + ++ ++ ++ lF++ l+s++ c+e +++ss++e+ ++l+++++ + 
   Q: 195  QQDAEECWTQLLYTLSQSL-----------------------KAPTSSEDSDAVKALFGVNLRSRLHCQESGEESSETESVYSLKCHISHEV 263
           *******************.......................3467788899*************************************998 PP
   S: 181  etkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfcts..... 267
           +     l++ L++  k e le      ++   +    +k+  +++lP++L++++ Rf +++e +++ ki +kv++pl Ld+   c++     
   Q: 264  N----HLHEGLKHGLKGE-LE----KTSPALGRTAVYVKESLIDSLPRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEdlrkk 346
           6....6888887766665.44....47899999999***************************************************77777 PP
   S: 268  ............................................peekqke.................kkkYeLiavvvHsG.slssGHYva 297
                                                       +     +                 + +Y+L+av+ H+G s++sGHYva
   Q: 347  leaprqklrdeegkklglqtsaksgskdsdvkmtdaeasangsgE-----SstvnpqegassekethmTGIYDLVAVLTHKGrSADSGHYVA 433
           777777776666666666666666666666555555555555550.....055555555555666666************************ PP
   S: 298  yvknekgkWllfdDskVtevkeeevleetg....staYvlfYkr 337
           +vk+e+gkW+++dD++ +  +ee++ + +g    + aY+ +Yk 
   Q: 434  WVKQESGKWIQYDDDNPSMQREEDITKLSGggdwHMAYITMYKA 477
           ***************************988************97 PP

ULD/UDP/UBQ/UBQ_Other

   S: 25   eLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllek 72
           ++K ++++++g+ppe+q++++kG +L+dd ++++ glk+g++++++ +
   Q: 26   VFKAHLYDLTGVPPERQKIMVKGGLLKDDGDWSAIGLKEGQKLMMMGT 73
           78*******************************************976 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MPRVSVKWQK NVFDGIEIDT SLPPYVFKAH LYDLTGVPPE RQKIMVKGGL LKDDGDWSAI 60
GLKEGQKLMM MGTADEIVKA PEKAIVFAED LPEEAQATNL GYSAGLVNLG NTCYMNSTVQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCCAGTT CTCACAGCGA AGATGCCCAG AGGTTCCTTC TCTTTCGATT TCTTCGATTA 60
CTAATACTTT CTCGGATCTT TTTGTCCTCG ATTCCTTTCG AGTTTTCGTA ATCTGGAATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0645--Protease
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00240--ubiquitin
PF00443--UCH

SMART

SM00213--UBQ

Gene Ontology

GO:0009506--C:plasmodesma
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_892148

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000893	Aegilops tauschii	51.38	2.00e-82	299.00
IUUC-Aml-002053	Ailuropoda melanoleuca	42.40	6.00e-110	390.00
IUUC-Atr-002725	Amborella trichopoda	75.10	0.00e+00	702.00
IUUC-Ath-007623	Arabidopsis thaliana	96.68	0.00e+00	914.00
IUUC-Ago-007796	Ashbya gossypii	34.12	1.00e-62	233.00
IUUC-Bta-012553	Bos taurus	42.17	1.00e-110	392.00
IUUC-Bci-013606	Botrytis cinerea	37.06	7.00e-83	300.00
IUUC-Bdi-014567	Brachypodium distachyon	69.58	0.00e+00	663.00
IUUC-Bol-015565	Brassica oleracea	92.13	0.00e+00	890.00
IUUC-Bra-017297	Brassica rapa	92.16	0.00e+00	889.00
IUUC-Cel-018140	Caenorhabditis elegans	36.20	2.00e-80	292.00
IUUC-Cja-019516	Callithrix jacchus	42.43	1.00e-110	392.00
IUUC-Cfa-020808	Canis familiaris	42.40	1.00e-110	393.00
IUUC-Csa-023429	Chlorocebus sabaeus	42.60	5.00e-110	390.00
IUUC-Cho-024347	Choloepus hoffmanni	42.60	4.00e-110	391.00
IUUC-Cgl-026757	Colletotrichum gloeosporioides	41.29	2.00e-65	243.00
IUUC-Cne-026963	Cryptococcus neoformans	36.27	3.00e-77	281.00
IUUC-Cme-027240	Cyanidioschyzon merolae	37.88	3.00e-71	261.00
IUUC-Dno-029967	Dasypus novemcinctus	42.40	4.00e-109	387.00
IUUC-Dor-030886	Dipodomys ordii	36.00	4.00e-76	278.00
IUUC-Dse-031466	Dothistroma septosporum	32.65	2.00e-72	266.00
IUUC-Ete-032351	Echinops telfairi	40.21	9.00e-101	359.00
IUUC-Eeu-035220	Erinaceus europaeus	33.43	1.00e-45	177.00
IUUC-Fca-036210	Felis catus	42.60	4.00e-111	394.00
IUUC-Gma-043255	Glycine max	75.16	0.00e+00	744.00
IUUC-Ggo-045458	Gorilla gorilla	37.57	3.00e-85	308.00
IUUC-Hsa-045706	Homo sapiens	42.60	5.00e-110	390.00
IUUC-Hvu-047821	Hordeum vulgare	69.75	3.00e-97	347.00
IUUC-Itr-048654	Ictidomys tridecemlineatus	42.40	7.00e-111	393.00
IUUC-Lch-050464	Latimeria chalumnae	42.16	5.00e-110	390.00
IUUC-Lpe-051419	Leersia perrieri	68.75	0.00e+00	637.00
IUUC-Lma-053177	Leptosphaeria maculans	35.33	6.00e-81	294.00
IUUC-Mcc-055893	Macaca mulatta	42.60	5.00e-110	390.00
IUUC-Meu-056307	Macropus eugenii	38.76	5.00e-100	357.00
IUUC-Mor-057171	Magnaporthe oryzae	37.27	2.00e-78	286.00
IUUC-Mtr-057901	Medicago truncatula	76.88	0.00e+00	755.00
IUUC-Mla-058897	Melampsora laricipopulina	35.14	1.00e-77	283.00
IUUC-Mvi-060562	Microbotryum violaceum	31.16	1.00e-62	233.00
IUUC-Mmr-060624	Microcebus murinus	42.66	1.00e-112	399.00
IUUC-Mdo-061809	Monodelphis domestica	42.23	5.00e-109	387.00
IUUC-Mmu-063869	Mus musculus	42.17	9.00e-110	389.00
IUUC-Mac-064876	Musa acuminata	68.54	3.00e-179	620.00
IUUC-Mpu-066480	Mustela putorius furo	42.40	9.00e-111	393.00
IUUC-Mlu-067866	Myotis lucifugus	43.60	4.00e-111	394.00
IUUC-Nle-070121	Nomascus leucogenys	47.89	2.00e-57	214.00
IUUC-Oan-073635	Ornithorhynchus anatinus	38.48	2.00e-82	298.00
IUUC-Ocu-074926	Oryctolagus cuniculus	41.88	1.00e-108	386.00
IUUC-Oba-075633	Oryza barthii	67.50	0.00e+00	629.00
IUUC-Obr-076423	Oryza brachyantha	69.38	0.00e+00	638.00
IUUC-Ogl-077913	Oryza glaberrima	69.17	0.00e+00	641.00
IUUC-Ogu-078435	Oryza glumaepatula	67.50	0.00e+00	629.00
IUUC-Oin-080072	Oryza indica	67.51	1.00e-180	625.00
IUUC-Olo-080535	Oryza longistaminata	61.52	5.00e-163	566.00
IUUC-Ome-081309	Oryza meridionalis	67.50	0.00e+00	629.00
IUUC-Oni-083113	Oryza nivara	67.50	0.00e+00	629.00
IUUC-Opu-083168	Oryza punctata	66.04	6.00e-174	602.00
IUUC-Oru-084253	Oryza rufipogon	67.50	0.00e+00	629.00
IUUC-Osa-085554	Oryza sativa	69.38	0.00e+00	643.00
IUUC-Olu-087818	Ostreococcus lucimarinus	41.15	3.00e-91	328.00
IUUC-Oga-088571	Otolemur garnettii	42.28	3.00e-110	391.00
IUUC-Oar-089526	Ovis aries	42.20	2.00e-110	391.00
IUUC-Ptr-091433	Pan troglodytes	42.60	5.00e-110	390.00
IUUC-Pan-091966	Papio anubis	42.60	5.00e-110	390.00
IUUC-Ppa-095756	Physcomitrella patens	63.20	3.00e-172	597.00
IUUC-Pab-098477	Pongo abelii	37.63	1.00e-79	289.00
IUUC-Pop-099221	Populus trichocarpa	77.66	0.00e+00	716.00
IUUC-Ppe-101812	Prunus persica	79.92	0.00e+00	736.00
IUUC-Pva-102462	Pteropus vampyrus	38.67	1.00e-84	306.00
IUUC-Pgr-103623	Puccinia graminis	42.73	2.00e-71	262.00
IUUC-Ptt-103767	Puccinia triticina	41.43	3.00e-66	245.00
IUUC-Rno-105351	Rattus norvegicus	42.37	9.00e-109	386.00
IUUC-Sce-106168	Saccharomyces cerevisiae	33.19	2.00e-61	229.00
IUUC-Sha-107491	Sarcophilus harrisii	42.71	1.00e-110	392.00
IUUC-Ssl-108659	Sclerotinia sclerotiorum	36.20	4.00e-84	305.00
IUUC-Smo-109276	Selaginella moellendorffii	64.23	4.00e-174	603.00
IUUC-Sit-110361	Setaria italica	69.04	0.00e+00	657.00
IUUC-Sly-110965	Solanum lycopersicum	75.57	0.00e+00	728.00
IUUC-Sar-113355	Sorex araneus	39.62	1.00e-61	229.00
IUUC-Sbi-114778	Sorghum bicolor	68.27	0.00e+00	647.00
IUUC-Tca-121246	Theobroma cacao	79.30	0.00e+00	755.00
IUUC-Tre-121969	Trichoderma reesei	35.13	1.00e-72	266.00
IUUC-Tae-125484	Triticum aestivum	69.58	0.00e+00	655.00
IUUC-Tur-126128	Triticum urartu	52.63	4.00e-79	288.00
IUUC-Ttr-128701	Tursiops truncatus	38.57	2.00e-80	291.00
IUUC-Vda-129723	Verticillium dahliae	35.06	6.00e-74	271.00
IUUC-Vvi-131037	Vitis vinifera	79.05	0.00e+00	768.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence