iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lma-053258

Ensembl Protein ID

CBX90284

UniProt Accession

E4ZG64; E4ZG64_LEPMJ

Genbank Protein ID

CBX90284.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

FP929064

Gene Name

YTM1; LEMA_P064100.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LEMA_P064100.1	CBX90284	CBX90284

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-23	79.3	1184	1223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt++v+++ f  +d t   s+s+D+t+k WDl t +++ 
   Q: 1184 GHTSPVSSVIFkpDDaTVAYSASHDHTLKTWDLPTSTCVD 1223
           8***********6669******************999975 PP

Organism

Leptosphaeria maculans

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSSSSGPDQT LGDAVLQSVQ YGLFPQDEHL ASAPVPCSTL PTLSEVIAKA RDETKTQIRV 60
LSREAAPDVD GWITQARKLQ DDIKRSQETA KEIVQQAQNG KQHTARVQDS ASKVSLLHAE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCTT CTTCAGGGCC TGACCAGACA CTGGGCGATG CCGTCCTTCA GTCTGTCCAG 60
TATGGCCTCT TTCCTCAAGA CGAACATCTT GCCTCTGCCC CCGTGCCATG CAGTACCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR027295--Quinoprotein_ADH-like_fam
IPR009361--RZZ-complex_Zw10
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40
PF06248--Zw10

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000775--C:chromosome, centromeric region
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0007067--P:mitotic nuclear division

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	30.75	4.00e-44	170.00
IUUC-Aml-001997	Ailuropoda melanoleuca	28.65	3.00e-31	127.00
IUUC-Atr-002544	Amborella trichopoda	30.28	2.00e-37	148.00
IUUC-Apl-003981	Anas platyrhynchos	28.06	3.00e-33	134.00
IUUC-Aca-004370	Anolis carolinensis	27.59	4.00e-39	153.00
IUUC-Aly-006455	Arabidopsis lyrata	26.51	2.00e-41	161.00
IUUC-Ath-006669	Arabidopsis thaliana	28.40	2.00e-39	154.00
IUUC-Ago-007864	Ashbya gossypii	39.92	5.00e-87	313.00
IUUC-Acl-008177	Aspergillus clavatus	52.71	2.00e-131	461.00
IUUC-Afl-008617	Aspergillus flavus	53.60	2.00e-131	460.00
IUUC-Afu-008752	Aspergillus fumigatus	53.08	2.00e-124	437.00
IUUC-Ani-009136	Aspergillus nidulans	54.08	1.00e-127	447.00
IUUC-Ang-009701	Aspergillus niger	54.96	5.00e-127	446.00
IUUC-Aor-009884	Aspergillus oryzae	53.60	2.00e-132	464.00
IUUC-Ate-010472	Aspergillus terreus	54.13	6.00e-82	295.00
IUUC-Ame-011432	Astyanax mexicanus	26.78	7.00e-38	149.00
IUUC-Bgr-012218	Blumeria graminis	47.20	7.00e-114	402.00
IUUC-Bta-012829	Bos taurus	27.86	3.00e-33	134.00
IUUC-Bci-013953	Botrytis cinerea	47.78	7.00e-123	432.00
IUUC-Bdi-014351	Brachypodium distachyon	32.30	1.00e-40	159.00
IUUC-Bol-016514	Brassica oleracea	29.35	2.00e-38	151.00
IUUC-Bra-016988	Brassica rapa	29.61	3.00e-39	154.00
IUUC-Cel-018569	Caenorhabditis elegans	23.24	7.00e-17	80.10
IUUC-Cja-019468	Callithrix jacchus	27.30	7.00e-32	129.00
IUUC-Cfa-020471	Canis familiaris	26.12	4.00e-30	124.00
IUUC-Cpo-022260	Cavia porcellus	27.61	1.00e-31	129.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	30.64	2.00e-39	154.00
IUUC-Csa-023989	Chlorocebus sabaeus	27.05	9.00e-31	126.00
IUUC-Cho-024426	Choloepus hoffmanni	27.06	4.00e-25	107.00
IUUC-Cin-025789	Ciona intestinalis	28.26	4.00e-32	130.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	50.54	8.00e-34	134.00
IUUC-Cne-027063	Cryptococcus neoformans	25.24	4.00e-27	114.00
IUUC-Dre-027907	Danio rerio	26.78	2.00e-39	155.00
IUUC-Dno-029225	Dasypus novemcinctus	26.37	1.00e-31	129.00
IUUC-Dse-031308	Dothistroma septosporum	45.61	1.00e-106	377.00
IUUC-Dme-032189	Drosophila melanogaster	25.37	5.00e-36	143.00
IUUC-Ete-032247	Echinops telfairi	23.88	3.00e-23	101.00
IUUC-Eca-034285	Equus caballus	26.87	2.00e-31	128.00
IUUC-Eeu-035322	Erinaceus europaeus	29.78	5.00e-25	106.00
IUUC-Fca-036114	Felis catus	27.11	4.00e-32	130.00
IUUC-Fal-036891	Ficedula albicollis	28.99	3.00e-29	120.00
IUUC-Fox-037965	Fusarium oxysporum	44.78	2.00e-101	360.00
IUUC-Fso-038244	Fusarium solani	44.94	3.00e-101	360.00
IUUC-Gmo-039040	Gadus morhua	25.81	8.00e-39	152.00
IUUC-Ggr-040093	Gaeumannomyces graminis	42.92	5.00e-86	310.00
IUUC-Gga-040610	Gallus gallus	28.11	1.00e-35	142.00
IUUC-Gac-042117	Gasterosteus aculeatus	26.92	1.00e-38	152.00
IUUC-Gma-043425	Glycine max	31.67	3.00e-43	167.00
IUUC-Ggo-045179	Gorilla gorilla	27.30	3.00e-32	130.00
IUUC-Hsa-046114	Homo sapiens	27.30	1.00e-31	129.00
IUUC-Hvu-047331	Hordeum vulgare	31.50	3.00e-36	144.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	26.62	9.00e-32	129.00
IUUC-Kpa-049304	Komagataella pastoris	40.75	9.00e-92	328.00
IUUC-Lch-050655	Latimeria chalumnae	26.05	1.00e-25	108.00
IUUC-Lpe-051675	Leersia perrieri	31.46	7.00e-44	170.00
IUUC-Loc-052868	Lepisosteus oculatus	27.27	1.00e-39	155.00
IUUC-Laf-053993	Loxodonta africana	26.12	2.00e-31	128.00
IUUC-Meu-056501	Macropus eugenii	29.66	3.00e-32	130.00
IUUC-Mor-057114	Magnaporthe oryzae	46.30	3.00e-110	390.00
IUUC-Mpo-057463	Magnaporthe poae	46.59	2.00e-39	154.00
IUUC-Mtr-058367	Medicago truncatula	28.00	5.00e-35	140.00
IUUC-Mla-059107	Melampsora laricipopulina	27.05	1.00e-34	139.00
IUUC-Mga-059745	Meleagris gallopavo	28.88	3.00e-35	140.00
IUUC-Mvi-060362	Microbotryum violaceum	26.81	7.00e-35	140.00
IUUC-Mdo-062257	Monodelphis domestica	28.50	2.00e-37	147.00
IUUC-Mmu-063546	Mus musculus	28.38	1.00e-32	132.00
IUUC-Mac-065540	Musa acuminata	30.58	2.00e-38	151.00
IUUC-Mpu-066284	Mustela putorius furo	26.87	6.00e-32	130.00
IUUC-Mlu-067241	Myotis lucifugus	26.62	3.00e-31	127.00
IUUC-Nfi-068260	Neosartorya fischeri	53.93	2.00e-129	454.00
IUUC-Ncr-068719	Neurospora crassa	44.54	5.00e-103	366.00
IUUC-Nle-068981	Nomascus leucogenys	26.30	8.00e-32	129.00
IUUC-Opr-071218	Ochotona princeps	24.88	1.00e-29	122.00
IUUC-Ont-071646	Oreochromis niloticus	25.70	2.00e-36	145.00
IUUC-Oan-073453	Ornithorhynchus anatinus	25.11	1.00e-38	152.00
IUUC-Ocu-074008	Oryctolagus cuniculus	26.62	1.00e-32	132.00
IUUC-Oba-075712	Oryza barthii	29.30	3.00e-31	127.00
IUUC-Obr-076721	Oryza brachyantha	30.68	2.00e-43	168.00
IUUC-Ogl-077229	Oryza glaberrima	32.37	7.00e-46	176.00
IUUC-Ogu-078977	Oryza glumaepatula	29.54	3.00e-31	127.00
IUUC-Oin-079683	Oryza indica	32.61	3.00e-46	177.00
IUUC-Olo-080291	Oryza longistaminata	28.37	1.00e-24	105.00
IUUC-Ome-081834	Oryza meridionalis	32.35	8.00e-46	176.00
IUUC-Oni-082507	Oryza nivara	31.64	3.00e-40	157.00
IUUC-Opu-083396	Oryza punctata	31.33	3.00e-44	171.00
IUUC-Oru-085220	Oryza rufipogon	31.64	8.00e-40	156.00
IUUC-Osa-085767	Oryza sativa	32.61	3.00e-46	177.00
IUUC-Ola-087420	Oryzias latipes	25.70	7.00e-41	159.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.33	8.00e-29	119.00
IUUC-Oga-088264	Otolemur garnettii	27.05	5.00e-33	133.00
IUUC-Oar-089335	Ovis aries	27.36	2.00e-32	131.00
IUUC-Ptr-091320	Pan troglodytes	27.30	1.00e-31	129.00
IUUC-Pan-092833	Papio anubis	27.30	3.00e-31	127.00
IUUC-Psi-093504	Pelodiscus sinensis	26.60	4.00e-32	130.00
IUUC-Pma-094189	Petromyzon marinus	29.73	4.00e-37	147.00
IUUC-Pno-094929	Phaeosphaeria nodorum	80.47	0.00e+00	764.00
IUUC-Ppa-095429	Physcomitrella patens	28.99	7.00e-43	166.00
IUUC-Pfo-096337	Poecilia formosa	25.92	2.00e-39	155.00
IUUC-Pab-097571	Pongo abelii	27.54	9.00e-32	129.00
IUUC-Pop-099977	Populus trichocarpa	32.37	7.00e-45	172.00
IUUC-Pca-100394	Procavia capensis	26.22	1.00e-26	112.00
IUUC-Ppe-101848	Prunus persica	31.77	1.00e-42	166.00
IUUC-Pgr-103637	Puccinia graminis	26.25	1.00e-36	145.00
IUUC-Ptt-103781	Puccinia triticina	26.29	3.00e-38	151.00
IUUC-Pte-104135	Pyrenophora teres	65.95	0.00e+00	1071.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	84.11	0.00e+00	773.00
IUUC-Rno-105114	Rattus norvegicus	26.37	2.00e-31	128.00
IUUC-Sce-106401	Saccharomyces cerevisiae	40.98	6.00e-90	322.00
IUUC-Sha-107122	Sarcophilus harrisii	27.21	5.00e-31	127.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.81	3.00e-78	283.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.31	3.00e-73	267.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	48.95	6.00e-128	449.00
IUUC-Smo-108720	Selaginella moellendorffii	30.00	3.00e-36	144.00
IUUC-Sit-110354	Setaria italica	29.47	1.00e-41	162.00
IUUC-Sly-111023	Solanum lycopersicum	29.33	7.00e-43	166.00
IUUC-Stu-112169	Solanum tuberosum	29.98	9.00e-45	172.00
IUUC-Sbi-114193	Sorghum bicolor	30.75	6.00e-39	153.00
IUUC-Sre-115002	Sporisorium reilianum	35.32	3.00e-24	105.00
IUUC-Ssc-116066	Sus scrofa	25.97	1.00e-32	132.00
IUUC-Tgu-117048	Taeniopygia guttata	29.17	5.00e-35	139.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.77	7.00e-37	146.00
IUUC-Tca-121605	Theobroma cacao	30.27	2.00e-40	158.00
IUUC-Tre-121947	Trichoderma reesei	42.49	3.00e-97	347.00
IUUC-Tvi-122481	Trichoderma virens	42.49	5.00e-97	346.00
IUUC-Tae-123847	Triticum aestivum	30.75	4.00e-44	170.00
IUUC-Tur-126586	Triticum urartu	30.53	4.00e-39	153.00
IUUC-Tme-126900	Tuber melanosporum	42.04	4.00e-98	349.00
IUUC-Uma-129628	Ustilago maydis	26.62	8.00e-19	87.00
IUUC-Vpa-130260	Vicugna pacos	26.87	6.00e-32	129.00
IUUC-Vvi-131009	Vitis vinifera	32.78	2.00e-45	174.00
IUUC-Xtr-132083	Xenopus tropicalis	26.39	5.00e-37	147.00
IUUC-Xma-133094	Xiphophorus maculatus	26.12	3.00e-39	154.00
IUUC-Yli-134531	Yarrowia lipolytica	33.83	2.00e-54	204.00
IUUC-Zma-135509	Zea mays	30.81	9.00e-42	162.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence