iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d041416	Zm00001d041416_T003	Zm00001d041416_T003
Zm00001d041416	Zm00001d041416_T001	Zm00001d041416_T001
Zm00001d041416	Zm00001d041416_T002	Zm00001d041416_T002
Zm00001d041416	Zm00001d041416_T004	Zm00001d041416_T004

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	3.10e-15	58.1	156	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 3    rvkvsykgeirsfaldlekpgkfedLlkavrt.lt......................elknsevalkYeDedGDlvtlksDedldkavsl 69
           +vkvs++g+++++++dl+ + +++ L ka++  +                        l++se+ ++YeD+dGD++ l++D++++++v+ 
   Q: 156  FVKVSLDGAPYLRKVDLKMYRSYQQLSKALENmFSsftigscgsqgmngmnesklvdLLNGSEYVPTYEDKDGDWM-LVGDVPWEMFVE- 243
           8*******************************622566999***************99999***************.************. PP
   S: 70   laskksllrlliqk 83
                s++rl+i+k
   Q: 244  -----SCKRLRIMK 252
           .....********8 PP

Organism

Zea mays

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MATTTDLGFE ATELRLGLPG GGGGGEPALG GEGRSSSSAS GKRGFAETID LKLKLEPAAV 60
VEAEEEEEDH GVAVALEKEE EAGKMKRSPS QSSVAAAAAA VLADPAEKPR AAKAQVVGWP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCCACAACC ACAACCCTTG TGACATTATT GCCCCCTCTT CCCTTCCCAA CCCAACCCAT 60
TGCATTTGCA AGCCCTTTTA CATTGCAGAG CGCCAGAGCC TCGCTCGCTC TCGGAACAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002559	Amborella trichopoda	56.32	1.00e-68	251.00
IUUC-Aly-005852	Arabidopsis lyrata	55.75	1.00e-56	212.00
IUUC-Ath-006635	Arabidopsis thaliana	53.59	1.00e-59	221.00
IUUC-Bdi-014859	Brachypodium distachyon	69.88	6.00e-71	259.00
IUUC-Bol-015767	Brassica oleracea	56.39	2.00e-57	214.00
IUUC-Bra-017401	Brassica rapa	54.17	2.00e-55	207.00
IUUC-Gma-044404	Glycine max	75.68	2.00e-61	228.00
IUUC-Hvu-047087	Hordeum vulgare	78.81	4.00e-67	246.00
IUUC-Lpe-050724	Leersia perrieri	50.44	5.00e-43	166.00
IUUC-Mtr-058641	Medicago truncatula	58.22	3.00e-64	237.00
IUUC-Mla-059044	Melampsora laricipopulina	61.54	3.40e+00	27.30
IUUC-Mac-065144	Musa acuminata	66.52	9.00e-72	262.00
IUUC-Oba-075945	Oryza barthii	82.58	8.00e-67	246.00
IUUC-Obr-076745	Oryza brachyantha	65.23	4.00e-67	246.00
IUUC-Ogl-077429	Oryza glaberrima	56.76	1.00e-56	212.00
IUUC-Ogu-078911	Oryza glumaepatula	68.50	2.00e-71	261.00
IUUC-Oin-079136	Oryza indica	81.94	1.00e-66	245.00
IUUC-Olo-080519	Oryza longistaminata	56.38	1.00e-42	165.00
IUUC-Oni-082674	Oryza nivara	82.58	1.00e-66	246.00
IUUC-Osa-086164	Oryza sativa	81.94	1.00e-66	245.00
IUUC-Ppa-095740	Physcomitrella patens	40.94	2.00e-29	122.00
IUUC-Pop-099218	Populus trichocarpa	59.45	2.00e-68	251.00
IUUC-Ppe-101719	Prunus persica	57.85	1.00e-60	225.00
IUUC-Smo-109586	Selaginella moellendorffii	48.17	3.00e-34	138.00
IUUC-Sit-110063	Setaria italica	80.54	5.00e-91	326.00
IUUC-Sly-111769	Solanum lycopersicum	59.91	9.00e-68	249.00
IUUC-Stu-112038	Solanum tuberosum	59.03	5.00e-64	236.00
IUUC-Sbi-114725	Sorghum bicolor	71.43	2.00e-79	288.00
IUUC-Tca-121532	Theobroma cacao	60.44	4.00e-65	240.00
IUUC-Tre-122196	Trichoderma reesei	34.62	4.10e-01	29.60
IUUC-Tae-124253	Triticum aestivum	70.22	9.00e-69	252.00
IUUC-Tur-126762	Triticum urartu	57.38	1.00e-68	252.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence