iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095238

Ensembl Protein ID

PP1S95_40V6.1

UniProt Accession

A9SMK3; A9SMK3_PHYPA

Genbank Protein ID

EDQ67584.1

Protein Name

Transcription initiation factor TFIID, subunit TAF1

Genbank Nucleotide ID

DS544984

Gene Name

HAF1501; PHYPADRAFT_165727

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S95_40V6	PP1S95_40V6.1	PP1S95_40V6.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	9.40e-08	32.6	717	791

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKekiekklg..ippeqqrLiykGkiLeddktLadyglkdgstihllekk 73
           ++v+vk+l g+  +l v+ s+t  +LK k  kklg  ip e+++  y+Gk+L d+ t+a+  ++++s++hl+++k
   Q: 717  MKVIVKTLGGKGSKLTVDASETLDVLKAKTAKKLGdlIPFEKMKVFYSGKELVDGYTFAQQQVPPNSVLHLVRTK 791
           799********889****************99999666777*******************************986 PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MNINAAVGLE VGTLMGDIFK ENSERDYDEE EEDGDGDGEG RGEQMLGFMF GNVDDSGGLD 60
EEYLDQDAKE HLSALAHQLG PSLFDIEQLC AKRKRLTDAS AADEHEDYDQ KAVDAVDYED 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATATTA ATGCAGCTGT AGGTCTTGAA GTTGGGACCC TTATGGGTGA TATATTCAAA 60
GAGAACAGTG AAAGGGACTA CGATGAGGAA GAGGAAGATG GAGATGGAGA TGGAGAGGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
IPR009067--TAF_II_230-bd
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF09247--TBP-binding
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0003743--F:translation initiation factor activity
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

KEGG

ppp:PHYPADRAFT_165727

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006976	Arabidopsis thaliana	48.38	0.00e+00	823.00
IUUC-Bol-015982	Brassica oleracea	46.17	0.00e+00	915.00
IUUC-Bra-017875	Brassica rapa	46.35	0.00e+00	926.00
IUUC-Hvu-047343	Hordeum vulgare	44.67	1.00e-166	579.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence