iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-015020

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000883

Gene Name

LOC100833314; BRADI_4g10930

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI4G10930	BRADI4G10930.1	BRADI4G10930.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.00e-36	121.2	242	273
UBD/Beta-Prp	3.20e-50	171.5	28	321

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtl.lvsGsdDgtikvWDl 30
           gH+++v +++  +d++ +++Gs D t+++WD+
   Q: 242  GHASWVLSIDVsPDGMaVATGSSDRTVRLWDI 273
           8***********99553899***********6 PP

UBD/Beta-Prp

   S: 19   spdksllatgsrdgtikvwdvttgkllrsl.sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg.dklvs 111
           ++ + ll+tg  d+t++ w++++  + +    gh  +v ++  +p g i + +s D  i+v+d+++g  v tl +  ++v+ ++f+p+g    ++
   Q: 28   HRPTALLLTGALDETVRAWRADDLAAASPPaRGHALGVVSLAAHPAGVIAAAVSLDSYIRVFDVDSGASVATLDAPPSEVWGVQFHPKGvALAAA 122
           556789*****************888666569*******************************************************9999999* PP
   S: 112  Gshdrtirvwdletgqclee...........tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkel 195
           G+    +++wd+e+ q + +            ++g  ++v +v+++pdg+ll+ Gs D+t+ ++d  ++k l++l+g h+ +v+s+ f++  +++
   Q: 123  GGGSGSVKLWDTEKWQPIASlpvprpegarpDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEG-HHMPVRSMVFSPVDPHV 216
           ******************99**********98999*****************************************9.************99888 PP
   S: 196  vsgsl.dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfg.....dnvlvlgs 284
           +  ++ d  + ++d +++  + ++ gh ++v+s+++sp++  +++gssD+++r+Wd+  +  ++t+++h ++v++va+  +g        l+++s
   Q: 217  LFTACdDAHIHIYDAKEKGLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINARASVQTMSNHSDQVWAVAFRPPGgegvrAGRLASAS 311
           766661578*********************************************************************555533333667799** PP
   S: 285  edskvniwkl 294
           +d+++ ++++
   Q: 312  DDKSISLYDY 321
           ********98 PP

Organism

Brachypodium distachyon

Protein Sequence
(Fasta)

MKLAGLKSVD GAHEESVWAA AWAPAAEHRP TALLLTGALD ETVRAWRADD LAAASPPARG 60
HALGVVSLAA HPAGVIAAAV SLDSYIRVFD VDSGASVATL DAPPSEVWGV QFHPKGVALA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGCTTG CGGGGCTCAA GTCGGTGGAC GGGGCGCACG AGGAGTCGGT GTGGGCGGCG 60
GCGTGGGCGC CGGCGGCGGA GCACCGCCCG ACGGCGCTGC TCCTCACGGG CGCGCTCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016593--C:Cdc73/Paf1 complex
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0010452--P:histone H3-K36 methylation
GO:0051568--P:histone H3-K4 methylation
GO:0009910--P:negative regulation of flower development
GO:0016441--P:posttranscriptional gene silencing

KEGG

bdi:100833314

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000774	Aegilops tauschii	83.82	4.00e-150	523.00
IUUC-Aml-002245	Ailuropoda melanoleuca	37.59	3.00e-46	177.00
IUUC-Atr-003142	Amborella trichopoda	68.02	2.00e-79	287.00
IUUC-Apl-003179	Anas platyrhynchos	36.86	1.00e-49	189.00
IUUC-Aca-004880	Anolis carolinensis	37.88	2.00e-54	205.00
IUUC-Aly-005956	Arabidopsis lyrata	68.73	1.00e-120	425.00
IUUC-Ath-007230	Arabidopsis thaliana	69.04	2.00e-112	398.00
IUUC-Acl-008297	Aspergillus clavatus	32.14	1.00e-16	80.10
IUUC-Ame-011511	Astyanax mexicanus	38.13	3.00e-51	194.00
IUUC-Bgr-012189	Blumeria graminis	30.25	6.00e-17	80.50
IUUC-Bta-012936	Bos taurus	37.59	4.00e-46	177.00
IUUC-Bol-016345	Brassica oleracea	69.66	4.00e-122	430.00
IUUC-Bra-017323	Brassica rapa	69.66	2.00e-122	430.00
IUUC-Cja-019961	Callithrix jacchus	37.59	4.00e-46	177.00
IUUC-Cfa-020862	Canis familiaris	37.93	1.00e-46	179.00
IUUC-Cpo-021356	Cavia porcellus	37.59	2.00e-46	178.00
IUUC-Cre-022602	Chlamydomonas reinhardtii	41.98	2.00e-48	184.00
IUUC-Csa-024067	Chlorocebus sabaeus	37.59	5.00e-46	177.00
IUUC-Cho-024421	Choloepus hoffmanni	35.80	9.00e-20	89.00
IUUC-Cin-025261	Ciona intestinalis	38.51	2.00e-54	204.00
IUUC-Cne-026846	Cryptococcus neoformans	30.29	2.00e-24	105.00
IUUC-Dre-027706	Danio rerio	28.43	5.00e-31	127.00
IUUC-Dno-029084	Dasypus novemcinctus	37.67	9.00e-45	172.00
IUUC-Dor-030353	Dipodomys ordii	33.33	3.00e-36	144.00
IUUC-Dme-031836	Drosophila melanogaster	38.31	8.00e-53	199.00
IUUC-Ete-032261	Echinops telfairi	37.37	4.00e-46	177.00
IUUC-Eca-034231	Equus caballus	34.48	2.00e-37	148.00
IUUC-Eeu-034828	Erinaceus europaeus	37.24	1.00e-43	169.00
IUUC-Fca-036569	Felis catus	37.59	2.00e-46	178.00
IUUC-Fal-037469	Ficedula albicollis	38.19	9.00e-50	189.00
IUUC-Fox-038047	Fusarium oxysporum	28.20	3.00e-20	91.70
IUUC-Gmo-039579	Gadus morhua	40.68	2.00e-53	201.00
IUUC-Gga-040808	Gallus gallus	37.85	1.00e-48	186.00
IUUC-Gac-042100	Gasterosteus aculeatus	39.66	4.00e-52	197.00
IUUC-Gma-044408	Glycine max	71.52	1.00e-122	432.00
IUUC-Ggo-045227	Gorilla gorilla	37.59	4.00e-46	177.00
IUUC-Hsa-045839	Homo sapiens	37.59	4.00e-46	177.00
IUUC-Hvu-047591	Hordeum vulgare	93.17	2.00e-153	534.00
IUUC-Itr-048741	Ictidomys tridecemlineatus	37.59	4.00e-46	177.00
IUUC-Lch-049549	Latimeria chalumnae	35.02	1.00e-45	176.00
IUUC-Lpe-050746	Leersia perrieri	91.36	7.00e-142	495.00
IUUC-Loc-052540	Lepisosteus oculatus	37.71	1.00e-47	182.00
IUUC-Lma-052992	Leptosphaeria maculans	27.82	5.00e-17	81.30
IUUC-Laf-053907	Loxodonta africana	37.59	4.00e-46	177.00
IUUC-Mcc-055828	Macaca mulatta	35.16	8.00e-43	166.00
IUUC-Meu-056075	Macropus eugenii	40.08	5.00e-47	180.00
IUUC-Mor-056971	Magnaporthe oryzae	35.33	3.00e-19	88.60
IUUC-Mtr-057728	Medicago truncatula	68.73	3.00e-111	393.00
IUUC-Mga-059872	Meleagris gallopavo	37.85	4.00e-49	187.00
IUUC-Mmr-060985	Microcebus murinus	37.24	2.00e-45	175.00
IUUC-Mdo-062758	Monodelphis domestica	38.23	3.00e-50	191.00
IUUC-Mmu-063580	Mus musculus	37.24	1.00e-45	176.00
IUUC-Mac-064880	Musa acuminata	77.02	2.00e-136	477.00
IUUC-Mpu-066577	Mustela putorius furo	37.59	3.00e-46	177.00
IUUC-Nle-069573	Nomascus leucogenys	37.59	4.00e-46	177.00
IUUC-Opr-070216	Ochotona princeps	37.04	4.00e-46	177.00
IUUC-Ont-071981	Oreochromis niloticus	39.58	6.00e-52	196.00
IUUC-Oan-073223	Ornithorhynchus anatinus	42.13	4.00e-38	150.00
IUUC-Ocu-074199	Oryctolagus cuniculus	34.15	3.00e-38	151.00
IUUC-Oba-075255	Oryza barthii	80.43	9.00e-127	445.00
IUUC-Obr-076168	Oryza brachyantha	93.78	3.00e-107	380.00
IUUC-Ogl-077777	Oryza glaberrima	90.40	5.00e-141	492.00
IUUC-Ogu-078780	Oryza glumaepatula	90.40	5.00e-141	492.00
IUUC-Oin-079228	Oryza indica	90.40	4.00e-145	506.00
IUUC-Olo-080617	Oryza longistaminata	94.44	1.00e-77	280.00
IUUC-Ome-081421	Oryza meridionalis	88.54	1.00e-140	491.00
IUUC-Oni-082997	Oryza nivara	90.40	4.00e-145	506.00
IUUC-Opu-083931	Oryza punctata	91.61	6.00e-146	509.00
IUUC-Oru-084645	Oryza rufipogon	90.40	5.00e-141	492.00
IUUC-Osa-085842	Oryza sativa	90.40	4.00e-145	506.00
IUUC-Ola-086696	Oryzias latipes	38.89	9.00e-49	186.00
IUUC-Olu-087643	Ostreococcus lucimarinus	46.67	3.00e-47	180.00
IUUC-Oga-088272	Otolemur garnettii	37.93	1.00e-46	179.00
IUUC-Oar-089416	Ovis aries	37.59	4.00e-46	177.00
IUUC-Ptr-090944	Pan troglodytes	37.59	4.00e-46	177.00
IUUC-Pan-091861	Papio anubis	37.59	4.00e-46	177.00
IUUC-Psi-093750	Pelodiscus sinensis	37.24	4.00e-49	187.00
IUUC-Pma-094608	Petromyzon marinus	37.09	8.00e-45	172.00
IUUC-Ppa-095737	Physcomitrella patens	62.88	2.00e-106	377.00
IUUC-Pfo-096479	Poecilia formosa	38.62	3.00e-49	187.00
IUUC-Pab-098179	Pongo abelii	37.59	4.00e-46	177.00
IUUC-Pop-099532	Populus trichocarpa	69.49	5.00e-108	383.00
IUUC-Pca-100664	Procavia capensis	33.91	6.00e-23	100.00
IUUC-Ppe-102056	Prunus persica	68.73	8.00e-117	412.00
IUUC-Pva-102859	Pteropus vampyrus	37.24	5.00e-45	173.00
IUUC-Rno-105826	Rattus norvegicus	37.24	1.00e-45	175.00
IUUC-Sha-106660	Sarcophilus harrisii	37.46	2.00e-46	178.00
IUUC-Sja-107800	Schizosaccharomyces japonicus	27.59	1.00e-19	89.70
IUUC-Spo-108244	Schizosaccharomyces pombe	31.06	3.00e-19	88.20
IUUC-Smo-109382	Selaginella moellendorffii	56.83	7.00e-91	326.00
IUUC-Sit-110048	Setaria italica	93.48	1.00e-142	498.00
IUUC-Sly-111249	Solanum lycopersicum	61.23	9.00e-104	369.00
IUUC-Stu-112659	Solanum tuberosum	62.15	4.00e-103	366.00
IUUC-Sar-113743	Sorex araneus	37.50	4.00e-31	127.00
IUUC-Sbi-114309	Sorghum bicolor	91.61	2.00e-139	487.00
IUUC-Ssc-115560	Sus scrofa	35.17	4.00e-41	160.00
IUUC-Tgu-117300	Taeniopygia guttata	37.85	3.00e-49	187.00
IUUC-Tru-117933	Takifugu rubripes	39.32	2.00e-52	198.00
IUUC-Tsy-119574	Tarsius syrichta	30.69	2.00e-28	119.00
IUUC-Tni-120191	Tetraodon nigroviridis	39.68	6.00e-42	163.00
IUUC-Tca-120983	Theobroma cacao	69.44	8.00e-112	395.00
IUUC-Tae-124056	Triticum aestivum	94.10	2.00e-153	533.00
IUUC-Tur-126711	Triticum urartu	93.50	7.00e-150	522.00
IUUC-Tbe-127802	Tupaia belangeri	37.59	2.00e-46	178.00
IUUC-Vda-129720	Verticillium dahliae	27.92	2.00e-16	78.60
IUUC-Vpa-130618	Vicugna pacos	38.67	3.00e-39	154.00
IUUC-Vvi-130981	Vitis vinifera	71.52	3.00e-114	403.00
IUUC-Xtr-132460	Xenopus tropicalis	38.49	1.00e-48	186.00
IUUC-Xma-134154	Xiphophorus maculatus	38.62	3.00e-49	187.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence