iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000869

Ensembl Protein ID

EMT11460

UniProt Accession

M8BCR2; M8BCR2_AEGTA

Genbank Protein ID

EMT11460.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

KD554366

Gene Name

F775_05157

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_05157	EMT11460	EMT11460

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-31	106.0	147	185
UBD/Beta-Prp	1.70e-46	159.5	127	303

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + + +++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 147  GHRGAIKSIRFtPDgRWIVTGGEDNIVKVWDLTAGKLLH 185
           8***********9999*******************9986 PP

UBD/Beta-Prp

   S: 72   eDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkll 172
           +D  +k+wd+++  c+ht+kgh   + s++f p+g ++v+G++d++++vwdl  g+ l+  ++ h+g ++c+ +hp+++ll++Gs+Drtv++Wdl+t +l+
   Q: 127  KDTDLKIWDIKKKGCLHTYKGHRGAIKSIRFTPDGRWIVTGGEDNIVKVWDLTAGKLLH-DFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELI 226
           68889*****************************************************9.8999************************************* PP
   S: 173  rtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..d 250
                  +  v+s+ f+++gk  + ++l +++k+++ +  +c +++    +n  ++    ++++l +  +++ + +W  d
   Q: 227  GSAGP-EDTGVRSMVFHPDGKT-LFCGLEQSLKVFSWEPVRCHDAVDMRWNNLADLSIY-EGKLLGCSYHERRVGVWvaD 303
           99966.9999********9965.56889999***9999999999998888888888888.77777777789999998773 PP

Organism

Aegilops tauschii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYKF RILFSFLLTL RELFLVHAFL VLKLDFSLTI NLKLEEFVAH DAEVRSLAIG 60
KKSSRVFITG GSDRNVNLWA IGKQTPLLSL SGHTSSVEAV EFDTAEVLVL AGSSNGSIKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCCG AGAAGCGCGG CTACAAGTTC CGTATCCTTT TTTCTTTCTT GCTTACGCTC 60
CGAGAGCTGT TCTTGGTTCA CGCTTTTCTT GGTTCGATTT AGCTCACGGG GGCAAGAGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0472--Membrane
KW-0493--Microtubule
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

ats:F775_05157

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bdi-014531	Brachypodium distachyon	70.63	0.00e+00	1192.00
IUUC-Bol-015355	Brassica oleracea	62.89	5.00e-123	435.00
IUUC-Bra-017265	Brassica rapa	49.23	4.00e-123	435.00
IUUC-Gma-043341	Glycine max	41.39	1.00e-161	563.00
IUUC-Hvu-047729	Hordeum vulgare	76.54	0.00e+00	995.00
IUUC-Mac-065245	Musa acuminata	48.68	2.00e-157	548.00
IUUC-Oba-075016	Oryza barthii	70.42	0.00e+00	1050.00
IUUC-Obr-076138	Oryza brachyantha	68.71	0.00e+00	1199.00
IUUC-Ogl-077401	Oryza glaberrima	68.22	0.00e+00	1168.00
IUUC-Ogu-078062	Oryza glumaepatula	70.83	0.00e+00	1193.00
IUUC-Oin-080042	Oryza indica	70.60	0.00e+00	1192.00
IUUC-Olo-080713	Oryza longistaminata	70.56	0.00e+00	1042.00
IUUC-Ome-081192	Oryza meridionalis	70.55	0.00e+00	1031.00
IUUC-Oni-082473	Oryza nivara	70.65	0.00e+00	1184.00
IUUC-Opu-083293	Oryza punctata	73.01	0.00e+00	1173.00
IUUC-Oru-085183	Oryza rufipogon	70.49	0.00e+00	1189.00
IUUC-Osa-085801	Oryza sativa	68.11	0.00e+00	1167.00
IUUC-Pop-100006	Populus trichocarpa	44.08	3.00e-133	468.00
IUUC-Sit-110364	Setaria italica	67.73	0.00e+00	1097.00
IUUC-Sbi-114389	Sorghum bicolor	57.51	0.00e+00	943.00
IUUC-Ssc-115949	Sus scrofa	43.21	1.00e-46	179.00
IUUC-Tae-125491	Triticum aestivum	83.33	0.00e+00	1442.00
IUUC-Tur-126181	Triticum urartu	84.55	0.00e+00	1472.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence