iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049150

Ensembl Protein ID

CAY68879

UniProt Accession

C4R055; C4R055_KOMPG

Genbank Protein ID

CAY68879.1

Protein Name

Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA

Genbank Nucleotide ID

FN392320

Gene Name

PAS_chr2-1_0267

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr2-1_0267	CAY68879	CAY68879

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.20e-39	128.2	478	511
UBD/Beta-Prp	1.30e-83	278.6	335	619

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWD 29
           gH+++v+cl+f    +  t+l+s+s+D+ti+vW+
   Q: 478  GHEGPVSCLSFgqeGEaaTTLASASWDKTIRVWN 511
           8***********98445699*************9 PP

UBD/Beta-Prp

   S: 35   kvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
            v+++++++++ + +gh ++++a+++spdg+  vt+++D+ ik+wd+ +g c+ t+++h++ v+s++f + g++l s s d t+r wdl     ++++ ++
   Q: 335  LVYEWQSESYILKQQGHFDAINALTYSPDGSRVVTAADDGKIKIWDVLSGFCLATFEEHSSAVTSVRFAKRGQVLFSSSLDGTVRAWDLIRFRNFRTFTAP 435
           59**********************************************************************************************88899 PP
   S: 136  hdgvvncvvvhpdgnllvsGslD.rtvrlWdlktgkllrtltgghtdsvyslsfdsng...kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfsp 232
           ++    c++v+p+g ++ +GslD  ++ +W+++tg ll+ l g h+++v +lsf ++g   + l+s+s d+t+++w++   +  ++  +  + v+ +++ p
   Q: 436  ERVQFGCLAVDPSGEVVCAGSLDdFQIHVWSVQTGALLDSLAG-HEGPVSCLSFGQEGeaaTTLASASWDKTIRVWNIFGRSQQVEPFEVYSEVLAIDMRP 535
           99999*********999999886268***************99.**********************************977778888889999******** PP
   S: 233  nderlvsgssDgsiriWdlrsgdllktlqlhn....................ssvisvav..lsfgdnvlvlgsedskvniwklkkn 297
           +++ +++ +  g+i +W+++sg+ ++ +  ++                    +   + ++  +sf++  l+++++++++ ++++k++
   Q: 536  DGKEVAVSTLNGQILFWNVESGNQTNFIDAKRdiqvgrysddrfeaknskrgK---CFSTisYSFDGLSLIAAGDNNSICLYDVKNS 619
           *********************************************98884433...444444688999999999999*****99875 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MKSDFQFSNL LGTVYRQGNL VFINDGNTLI SPVGNRVSVF DLINNKSFTF PYEHRRDVAA 60
ITVNKQGTLL MSVDEHGRAI LVNFKARIVL HHFNFKSPVK AIEFSPDGHY FAVGCGKILQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGTCTG ATTTCCAGTT TTCTAACTTG TTAGGAACTG TCTACCGACA AGGAAATTTG 60
GTATTCATCA ATGATGGTAA CACCCTCATT TCTCCCGTGG GTAATCGTGT TTCGGTCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus

KEGG

ppa:PAS_chr2-1_0267

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001932	Ailuropoda melanoleuca	43.64	0.00e+00	754.00
IUUC-Atr-003033	Amborella trichopoda	41.73	2.00e-146	511.00
IUUC-Apl-003219	Anas platyrhynchos	42.22	0.00e+00	740.00
IUUC-Aca-004950	Anolis carolinensis	43.80	0.00e+00	756.00
IUUC-Aly-006213	Arabidopsis lyrata	39.53	8.00e-178	615.00
IUUC-Ath-006593	Arabidopsis thaliana	39.65	3.00e-180	623.00
IUUC-Ago-007916	Ashbya gossypii	65.06	0.00e+00	1150.00
IUUC-Acl-008225	Aspergillus clavatus	52.99	0.00e+00	945.00
IUUC-Afl-008390	Aspergillus flavus	51.82	0.00e+00	937.00
IUUC-Afu-009039	Aspergillus fumigatus	52.66	0.00e+00	938.00
IUUC-Ani-009228	Aspergillus nidulans	49.20	0.00e+00	823.00
IUUC-Ang-009663	Aspergillus niger	52.16	0.00e+00	922.00
IUUC-Aor-009923	Aspergillus oryzae	51.82	0.00e+00	937.00
IUUC-Ate-010264	Aspergillus terreus	52.84	0.00e+00	950.00
IUUC-Ame-010790	Astyanax mexicanus	44.29	2.00e-51	194.00
IUUC-Bgr-012066	Blumeria graminis	50.52	0.00e+00	927.00
IUUC-Bta-012399	Bos taurus	43.58	0.00e+00	724.00
IUUC-Bci-013757	Botrytis cinerea	53.46	0.00e+00	929.00
IUUC-Bdi-015028	Brachypodium distachyon	40.02	2.00e-177	613.00
IUUC-Bol-016521	Brassica oleracea	39.33	1.00e-173	601.00
IUUC-Bra-017096	Brassica rapa	39.78	2.00e-176	610.00
IUUC-Cel-018690	Caenorhabditis elegans	34.38	2.00e-146	511.00
IUUC-Cja-019229	Callithrix jacchus	43.58	0.00e+00	744.00
IUUC-Cfa-020504	Canis familiaris	43.08	0.00e+00	742.00
IUUC-Cpo-021574	Cavia porcellus	44.14	0.00e+00	765.00
IUUC-Cre-022756	Chlamydomonas reinhardtii	43.03	1.00e-135	475.00
IUUC-Csa-023436	Chlorocebus sabaeus	43.85	0.00e+00	729.00
IUUC-Cin-025397	Ciona intestinalis	42.15	1.00e-161	561.00
IUUC-Csv-026194	Ciona savignyi	44.89	1.00e-135	475.00
IUUC-Cgl-026684	Colletotrichum gloeosporioides	52.86	0.00e+00	929.00
IUUC-Cne-027031	Cryptococcus neoformans	47.72	0.00e+00	879.00
IUUC-Cme-027276	Cyanidioschyzon merolae	31.54	7.00e-79	286.00
IUUC-Dre-027514	Danio rerio	42.39	0.00e+00	694.00
IUUC-Dno-029191	Dasypus novemcinctus	42.34	3.00e-178	616.00
IUUC-Dor-030149	Dipodomys ordii	43.48	0.00e+00	743.00
IUUC-Dse-031260	Dothistroma septosporum	55.38	0.00e+00	654.00
IUUC-Dme-032043	Drosophila melanogaster	36.99	4.00e-176	609.00
IUUC-Ete-033102	Echinops telfairi	50.00	6.00e-151	525.00
IUUC-Eca-033223	Equus caballus	43.80	0.00e+00	757.00
IUUC-Fca-035795	Felis catus	42.26	0.00e+00	692.00
IUUC-Fal-036830	Ficedula albicollis	42.28	0.00e+00	746.00
IUUC-Fox-037835	Fusarium oxysporum	53.58	0.00e+00	942.00
IUUC-Fso-038324	Fusarium solani	52.91	0.00e+00	926.00
IUUC-Gmo-039355	Gadus morhua	41.95	0.00e+00	711.00
IUUC-Ggr-039840	Gaeumannomyces graminis	52.25	0.00e+00	902.00
IUUC-Gga-040907	Gallus gallus	46.48	6.00e-149	518.00
IUUC-Gac-042624	Gasterosteus aculeatus	43.53	0.00e+00	708.00
IUUC-Gma-043034	Glycine max	39.14	0.00e+00	646.00
IUUC-Hsa-046145	Homo sapiens	43.85	0.00e+00	753.00
IUUC-Hvu-047416	Hordeum vulgare	39.91	0.00e+00	632.00
IUUC-Itr-049083	Ictidomys tridecemlineatus	43.46	0.00e+00	751.00
IUUC-Lch-049460	Latimeria chalumnae	42.87	4.00e-180	622.00
IUUC-Lpe-050840	Leersia perrieri	40.00	2.00e-180	624.00
IUUC-Loc-052733	Lepisosteus oculatus	43.00	0.00e+00	743.00
IUUC-Lma-053277	Leptosphaeria maculans	52.43	0.00e+00	940.00
IUUC-Laf-054294	Loxodonta africana	44.02	0.00e+00	737.00
IUUC-Mcc-054624	Macaca mulatta	43.74	0.00e+00	752.00
IUUC-Meu-056665	Macropus eugenii	39.40	5.00e-84	303.00
IUUC-Mor-057288	Magnaporthe oryzae	52.88	0.00e+00	925.00
IUUC-Mpo-057594	Magnaporthe poae	51.44	0.00e+00	888.00
IUUC-Mtr-058700	Medicago truncatula	39.66	0.00e+00	654.00
IUUC-Mla-058846	Melampsora laricipopulina	47.28	0.00e+00	810.00
IUUC-Mga-059207	Meleagris gallopavo	38.43	2.00e-179	620.00
IUUC-Mvi-060327	Microbotryum violaceum	49.54	0.00e+00	868.00
IUUC-Mmr-061264	Microcebus murinus	44.06	0.00e+00	719.00
IUUC-Mdo-062327	Monodelphis domestica	43.29	0.00e+00	750.00
IUUC-Mmu-063542	Mus musculus	43.88	0.00e+00	730.00
IUUC-Mac-065142	Musa acuminata	40.95	0.00e+00	653.00
IUUC-Mpu-066098	Mustela putorius furo	41.98	0.00e+00	627.00
IUUC-Mlu-067056	Myotis lucifugus	40.62	0.00e+00	629.00
IUUC-Nfi-068323	Neosartorya fischeri	52.95	0.00e+00	944.00
IUUC-Ncr-068925	Neurospora crassa	52.89	0.00e+00	959.00
IUUC-Nle-068970	Nomascus leucogenys	43.74	0.00e+00	748.00
IUUC-Opr-070966	Ochotona princeps	52.58	7.00e-104	369.00
IUUC-Ont-071252	Oreochromis niloticus	41.72	0.00e+00	705.00
IUUC-Oan-072737	Ornithorhynchus anatinus	42.52	0.00e+00	722.00
IUUC-Oba-075794	Oryza barthii	39.62	6.00e-175	605.00
IUUC-Obr-076617	Oryza brachyantha	40.11	0.00e+00	632.00
IUUC-Ogl-077022	Oryza glaberrima	40.47	0.00e+00	638.00
IUUC-Ogu-078757	Oryza glumaepatula	34.38	3.00e-84	304.00
IUUC-Oin-079813	Oryza indica	40.69	0.00e+00	637.00
IUUC-Olo-080265	Oryza longistaminata	40.80	0.00e+00	640.00
IUUC-Ome-081494	Oryza meridionalis	40.58	0.00e+00	635.00
IUUC-Oni-082639	Oryza nivara	34.38	3.00e-84	304.00
IUUC-Opu-084005	Oryza punctata	40.91	0.00e+00	645.00
IUUC-Oru-084883	Oryza rufipogon	34.38	6.00e-84	303.00
IUUC-Osa-086158	Oryza sativa	40.69	0.00e+00	636.00
IUUC-Ola-086822	Oryzias latipes	42.68	0.00e+00	712.00
IUUC-Olu-087741	Ostreococcus lucimarinus	28.21	4.00e-20	88.20
IUUC-Oga-088887	Otolemur garnettii	44.01	0.00e+00	723.00
IUUC-Oar-090110	Ovis aries	41.76	0.00e+00	676.00
IUUC-Pan-092808	Papio anubis	43.76	0.00e+00	755.00
IUUC-Psi-093954	Pelodiscus sinensis	43.43	0.00e+00	745.00
IUUC-Pno-094922	Phaeosphaeria nodorum	53.36	0.00e+00	964.00
IUUC-Ppa-095678	Physcomitrella patens	43.55	0.00e+00	654.00
IUUC-Pfo-097175	Poecilia formosa	42.89	0.00e+00	722.00
IUUC-Pab-098155	Pongo abelii	44.11	0.00e+00	757.00
IUUC-Pop-099635	Populus trichocarpa	39.49	0.00e+00	642.00
IUUC-Pca-100947	Procavia capensis	40.96	0.00e+00	682.00
IUUC-Ppe-101552	Prunus persica	41.07	0.00e+00	679.00
IUUC-Pva-102744	Pteropus vampyrus	39.04	3.00e-179	620.00
IUUC-Pgr-103389	Puccinia graminis	47.90	0.00e+00	797.00
IUUC-Ptt-103953	Puccinia triticina	40.66	1.00e-179	620.00
IUUC-Pte-104079	Pyrenophora teres	52.89	0.00e+00	936.00
IUUC-Pyt-104656	Pyrenophora triticirepentis	52.78	0.00e+00	935.00
IUUC-Rno-105502	Rattus norvegicus	44.11	0.00e+00	750.00
IUUC-Sce-106390	Saccharomyces cerevisiae	65.47	0.00e+00	1192.00
IUUC-Sha-107264	Sarcophilus harrisii	38.86	2.00e-85	306.00
IUUC-Sja-107674	Schizosaccharomyces japonicus	52.91	0.00e+00	965.00
IUUC-Spo-108348	Schizosaccharomyces pombe	52.21	0.00e+00	940.00
IUUC-Smo-108982	Selaginella moellendorffii	40.82	0.00e+00	670.00
IUUC-Sit-110304	Setaria italica	40.98	0.00e+00	662.00
IUUC-Sly-111620	Solanum lycopersicum	45.21	2.00e-143	500.00
IUUC-Stu-112877	Solanum tuberosum	41.03	0.00e+00	691.00
IUUC-Sbi-114702	Sorghum bicolor	40.85	0.00e+00	648.00
IUUC-Sre-115129	Sporisorium reilianum	45.50	0.00e+00	771.00
IUUC-Ssc-115931	Sus scrofa	39.40	4.00e-85	306.00
IUUC-Tgu-116787	Taeniopygia guttata	42.02	0.00e+00	741.00
IUUC-Tru-118218	Takifugu rubripes	42.28	0.00e+00	715.00
IUUC-Tsy-119401	Tarsius syrichta	44.59	3.00e-117	414.00
IUUC-Tni-120046	Tetraodon nigroviridis	43.61	0.00e+00	689.00
IUUC-Tca-121685	Theobroma cacao	39.96	0.00e+00	673.00
IUUC-Tre-122154	Trichoderma reesei	53.40	0.00e+00	942.00
IUUC-Tvi-122451	Trichoderma virens	52.15	0.00e+00	935.00
IUUC-Tae-125397	Triticum aestivum	40.85	1.00e-103	369.00
IUUC-Tur-126650	Triticum urartu	40.05	2.00e-165	574.00
IUUC-Tme-127005	Tuber melanosporum	54.73	0.00e+00	974.00
IUUC-Tbe-128102	Tupaia belangeri	45.22	1.00e-130	458.00
IUUC-Ttr-128259	Tursiops truncatus	44.38	0.00e+00	728.00
IUUC-Uma-129511	Ustilago maydis	45.26	0.00e+00	750.00
IUUC-Vda-129833	Verticillium dahliae	48.72	0.00e+00	843.00
IUUC-Vvi-131572	Vitis vinifera	39.62	0.00e+00	637.00
IUUC-Xtr-131776	Xenopus tropicalis	30.71	2.00e-52	198.00
IUUC-Xma-133887	Xiphophorus maculatus	43.00	0.00e+00	697.00
IUUC-Yli-134427	Yarrowia lipolytica	56.69	0.00e+00	1053.00
IUUC-Zma-135980	Zea mays	40.76	0.00e+00	637.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence