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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007051
Ensembl Protein ID AT3G63000.1
UniProt Accession Q9LYC2; NPL41_ARATH
Genbank Protein ID CAB87745.1; AEE80422.1; AAK59569.1; AAL07248.1
Protein Name NPL4-like protein 1
Genbank Nucleotide ID AL163816; CP002686; AY035064; AY056362
Gene Name At3g63000; T20O10.100
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G63000 AT3G63000.1 AT3G63000.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
dbPPTdbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/ZnF/Other 27.74 2.00e-05 45.10 IUUC-Sce-106145
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome.
May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome.
Protein Sequence
(Fasta)
MTMLRVRSRD GLERVSVDGP HITVSQLKTL IQDQLQIPIH NQTLSTNRNL LLAKSPSDFL 60
AFTDMADPNL RISSLNLAHG SMVYLAYEGE RTIRGGPAVT PAGSFGRKMT VEDLIARQMR 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007051|UBD,UBD/ZnF/Other|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGTGTCTTCT GGGGCTTATC GATTCTTCCT TAAACTGGGA AACTACTTTG TTCGAATCTC 60
AGAGCTTTTT CGTTTCCCAT CGGAAGAAGA AACTCATATA TACCTTCCAA AAAATCCATA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007051|UBD,UBD/ZnF/Other|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR007717--NPL4_C
IPR024682--Npl4_Ub-like_dom
IPR029071--Ubiquitin-rel_dom

Pfam

PF05021--NPL4
PF11543--UN_NPL4

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0043130--F:ubiquitin binding
GO:0031625--F:ubiquitin protein ligase binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ath:AT3G63000
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-002939 Amborella trichopoda 72.44 1.00e-175 608.00
IUUC-Aly-005413 Arabidopsis lyrata 96.60 0.00e+00 784.00
IUUC-Ame-011438 Astyanax mexicanus 31.91 4.00e-09 53.10
IUUC-Bgr-012124 Blumeria graminis 21.56 1.00e-06 47.80
IUUC-Bol-016294 Brassica oleracea 90.05 0.00e+00 781.00
IUUC-Bra-017023 Brassica rapa 90.78 0.00e+00 754.00
IUUC-Cel-018713 Caenorhabditis elegans 25.67 3.00e-08 52.80
IUUC-Cgl-026685 Colletotrichum gloeosporioides 23.12 3.00e-06 46.60
IUUC-Cne-026794 Cryptococcus neoformans 25.61 1.00e-04 41.20
IUUC-Dse-031202 Dothistroma septosporum 28.57 6.00e-09 55.10
IUUC-Eeu-034485 Erinaceus europaeus 24.22 1.00e-13 70.90
IUUC-Fso-038152 Fusarium solani 25.55 4.00e-11 62.80
IUUC-Gma-044178 Glycine max 74.09 8.00e-160 555.00
IUUC-Hvu-047323 Hordeum vulgare 62.56 7.00e-71 259.00
IUUC-Lma-053092 Leptosphaeria maculans 26.30 2.00e-12 67.00
IUUC-Meu-056460 Macropus eugenii 36.51 1.00e-03 37.70
IUUC-Mor-057189 Magnaporthe oryzae 25.08 1.00e-09 57.80
IUUC-Mpo-057366 Magnaporthe poae 24.61 5.00e-09 55.50
IUUC-Mtr-057834 Medicago truncatula 72.88 5.00e-165 573.00
IUUC-Mla-059190 Melampsora laricipopulina 24.42 3.00e-05 43.50
IUUC-Mvi-060275 Microbotryum violaceum 24.40 1.00e-06 47.80
IUUC-Ncr-068936 Neurospora crassa 25.24 9.00e-08 51.20
IUUC-Olu-087601 Ostreococcus lucimarinus 42.18 3.00e-77 281.00
IUUC-Pgr-103626 Puccinia graminis 25.91 1.00e-06 47.80
IUUC-Sce-106145 Saccharomyces cerevisiae 27.74 6.00e-06 45.40
IUUC-Smo-108933 Selaginella moellendorffii 58.01 9.00e-134 469.00
IUUC-Sbi-113987 Sorghum bicolor 57.55 3.00e-122 431.00
IUUC-Sre-115095 Sporisorium reilianum 26.56 7.00e-07 48.90
IUUC-Tsy-118993 Tarsius syrichta 24.55 4.00e-14 72.40
IUUC-Tca-121169 Theobroma cacao 75.67 2.00e-180 624.00
IUUC-Tre-122046 Trichoderma reesei 24.76 6.00e-11 62.00
IUUC-Tme-127123 Tuber melanosporum 26.92 4.00e-13 69.30
IUUC-Uma-129492 Ustilago maydis 26.56 7.00e-07 48.90
Created Date 25-Jun-2017

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