iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131752

UUCD1 version

UUC-ViV-00435

Ensembl Protein ID

VIT_06s0004g04530.t01

UniProt Accession

F6GV22; F6GV22_VITVI

Genbank Protein ID

CCB43581.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

FN594951

Gene Name

PUB13; VIT_06s0004g04530

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_06s0004g04530	VIT_06s0004g04530.t01	VIT_06s0004g04530.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.20e-34	118.8	257	329

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIslelM+dPv++++G+ty+rs+Iekwl+ g+ tcP+t+q+l+++ l+Pn++lr+li +wce+n++
   Q: 257  IPDDFRCPISLELMNDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSQALTPNYVLRSLIAQWCESNGI 329
           89********************************************************************987 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MEEAKGAPVQ ELIDTVSKIS SISDYRCTVR KEYCNLARRL KLLIPMFEEI RDSKEPIPEE 60
SLKALVSLKE ALESAKELLR FGSEGSKIFM VLEREQVVSK FHEVTANLEQ ALSGISFEKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTAGATCT CTCATCTGAA GCCATGGAAG AAGCAAAAGG AGCTCCAGTA CAGGAGCTGA 60
TCGATACAGT TAGTAAGATA TCGTCAATCT CAGATTACAG ATGTACGGTC AGGAAAGAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR008709--Neurochondrin
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF05536--Neurochondrin
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

vvi:100258708

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000439	Aegilops tauschii	66.54	0.00e+00	724.00
IUUC-Aly-005681	Arabidopsis lyrata	72.99	0.00e+00	912.00
IUUC-Ath-007618	Arabidopsis thaliana	72.99	0.00e+00	913.00
IUUC-Bdi-014772	Brachypodium distachyon	64.57	0.00e+00	769.00
IUUC-Bol-015254	Brassica oleracea	73.85	0.00e+00	919.00
IUUC-Bra-017857	Brassica rapa	73.53	0.00e+00	906.00
IUUC-Gma-043064	Glycine max	77.09	0.00e+00	999.00
IUUC-Hvu-047052	Hordeum vulgare	67.85	0.00e+00	687.00
IUUC-Lpe-051284	Leersia perrieri	64.16	0.00e+00	763.00
IUUC-Loc-051960	Lepisosteus oculatus	27.08	6.00e-11	61.20
IUUC-Mtr-058332	Medicago truncatula	76.70	0.00e+00	990.00
IUUC-Mac-065438	Musa acuminata	62.56	0.00e+00	751.00
IUUC-Oba-075184	Oryza barthii	64.45	0.00e+00	783.00
IUUC-Obr-076590	Oryza brachyantha	63.59	0.00e+00	761.00
IUUC-Ogl-077386	Oryza glaberrima	64.45	0.00e+00	783.00
IUUC-Ogu-078326	Oryza glumaepatula	64.45	0.00e+00	785.00
IUUC-Oin-079687	Oryza indica	64.45	0.00e+00	783.00
IUUC-Olo-081001	Oryza longistaminata	64.45	0.00e+00	783.00
IUUC-Ome-081417	Oryza meridionalis	63.90	0.00e+00	790.00
IUUC-Oni-082379	Oryza nivara	64.45	0.00e+00	783.00
IUUC-Opu-083774	Oryza punctata	63.90	0.00e+00	787.00
IUUC-Oru-084885	Oryza rufipogon	64.29	0.00e+00	782.00
IUUC-Osa-085946	Oryza sativa	63.96	0.00e+00	775.00
IUUC-Ppa-095383	Physcomitrella patens	51.35	1.00e-176	612.00
IUUC-Pop-098809	Populus trichocarpa	82.65	0.00e+00	1066.00
IUUC-Ppe-102057	Prunus persica	84.01	0.00e+00	911.00
IUUC-Sit-110392	Setaria italica	68.07	0.00e+00	738.00
IUUC-Sly-111594	Solanum lycopersicum	77.37	0.00e+00	991.00
IUUC-Stu-112876	Solanum tuberosum	76.74	0.00e+00	978.00
IUUC-Sbi-113843	Sorghum bicolor	63.98	0.00e+00	741.00
IUUC-Tca-121745	Theobroma cacao	81.39	0.00e+00	1043.00
IUUC-Tae-123188	Triticum aestivum	65.07	0.00e+00	762.00
IUUC-Tur-126448	Triticum urartu	66.78	0.00e+00	753.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence