iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022650

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

DS496115

Gene Name

CHLREDRAFT_111274

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_111274	EDP06418	EDP06418

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-18	63.7	299	338

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvllk 37
           gH ++v ++a    ++  l+sG+ Dgt+++W++rtg++ +
   Q: 299  GHMGPVASIAPdpwTGQWLLSGGQDGTLRLWEVRTGRCWR 338
           8999*****988655588*******************976 PP

Organism

Chlamydomonas reinhardtii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

SDSSEDERPN RNTVGNVPLV WYKDEEHIGY DIEGARITKA QRKDRLQQLL DRNDSKKALR 60
TIYDPYNDEE VTLSKEELAM VMRIRAGQFP HLEVNPHETE HTWFTDPRDA EVMPIVDRPE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTGACTCAA GTGAGGACGA GCGGCCCAAC CGCAACACAG TGGGCAATGT GCCGCTGGTG 60
TGGTACAAGG ACGAGGAACA CATCGGGTGA GCCAGGCGGG ATGATGTGTA TGTATGTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0007276--P:gamete generation
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0051302--P:regulation of cell division

KEGG

cre:CHLREDRAFT_111274

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	46.55	2.00e-136	477.00
IUUC-Aml-001507	Ailuropoda melanoleuca	46.74	1.00e-138	485.00
IUUC-Atr-003141	Amborella trichopoda	44.57	2.00e-97	347.00
IUUC-Apl-003545	Anas platyrhynchos	42.93	7.00e-127	445.00
IUUC-Aly-005649	Arabidopsis lyrata	48.72	1.00e-171	595.00
IUUC-Ath-007625	Arabidopsis thaliana	48.96	5.00e-167	579.00
IUUC-Ago-007958	Ashbya gossypii	39.76	9.00e-138	482.00
IUUC-Acl-008344	Aspergillus clavatus	41.34	5.00e-126	443.00
IUUC-Afl-008616	Aspergillus flavus	41.44	2.00e-127	447.00
IUUC-Afu-009083	Aspergillus fumigatus	40.69	5.00e-120	423.00
IUUC-Ani-009365	Aspergillus nidulans	41.98	1.00e-127	448.00
IUUC-Ang-009796	Aspergillus niger	42.04	5.00e-124	436.00
IUUC-Aor-010015	Aspergillus oryzae	41.44	2.00e-127	447.00
IUUC-Ate-010537	Aspergillus terreus	41.79	2.00e-126	445.00
IUUC-Ame-011767	Astyanax mexicanus	59.13	2.00e-77	280.00
IUUC-Bgr-012286	Blumeria graminis	41.81	7.00e-128	449.00
IUUC-Bta-013569	Bos taurus	47.54	2.00e-153	534.00
IUUC-Bci-013820	Botrytis cinerea	41.32	1.00e-122	432.00
IUUC-Bdi-014477	Brachypodium distachyon	49.92	5.00e-170	589.00
IUUC-Bol-016099	Brassica oleracea	48.88	5.00e-174	602.00
IUUC-Bra-017174	Brassica rapa	48.72	4.00e-173	600.00
IUUC-Cel-018201	Caenorhabditis elegans	39.52	3.00e-126	443.00
IUUC-Cja-019009	Callithrix jacchus	47.28	2.00e-88	318.00
IUUC-Cfa-020173	Canis familiaris	45.20	8.00e-138	482.00
IUUC-Cpo-021796	Cavia porcellus	47.21	4.00e-148	516.00
IUUC-Csa-023440	Chlorocebus sabaeus	48.57	9.00e-158	548.00
IUUC-Cin-025782	Ciona intestinalis	43.96	8.00e-150	522.00
IUUC-Csv-026352	Ciona savignyi	44.60	3.00e-149	520.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	39.10	2.00e-97	348.00
IUUC-Cne-027004	Cryptococcus neoformans	41.81	3.00e-141	494.00
IUUC-Cme-027242	Cyanidioschyzon merolae	39.49	4.00e-114	403.00
IUUC-Dre-028658	Danio rerio	47.56	2.00e-164	571.00
IUUC-Dno-028883	Dasypus novemcinctus	49.44	8.00e-154	535.00
IUUC-Dor-031031	Dipodomys ordii	48.04	2.00e-157	547.00
IUUC-Dse-031443	Dothistroma septosporum	39.40	9.00e-123	432.00
IUUC-Dme-031786	Drosophila melanogaster	43.32	1.00e-152	531.00
IUUC-Eca-033677	Equus caballus	48.37	2.00e-152	530.00
IUUC-Eeu-035310	Erinaceus europaeus	45.91	2.00e-118	417.00
IUUC-Fca-035888	Felis catus	48.25	7.00e-149	518.00
IUUC-Fal-037438	Ficedula albicollis	45.99	3.00e-128	450.00
IUUC-Fox-037973	Fusarium oxysporum	40.80	7.00e-133	466.00
IUUC-Fso-038187	Fusarium solani	42.64	9.00e-133	465.00
IUUC-Gmo-039114	Gadus morhua	45.48	8.00e-144	501.00
IUUC-Ggr-039746	Gaeumannomyces graminis	42.70	2.00e-134	471.00
IUUC-Gga-040631	Gallus gallus	48.24	6.00e-89	318.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.80	5.00e-148	516.00
IUUC-Gma-044307	Glycine max	48.58	1.00e-163	568.00
IUUC-Ggo-045587	Gorilla gorilla	48.73	9.00e-158	548.00
IUUC-Hsa-046319	Homo sapiens	48.73	5.00e-158	549.00
IUUC-Hvu-047526	Hordeum vulgare	49.04	2.00e-159	554.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	48.80	8.00e-154	535.00
IUUC-Kpa-049221	Komagataella pastoris	40.26	2.00e-73	268.00
IUUC-Lch-049640	Latimeria chalumnae	46.38	1.00e-163	568.00
IUUC-Lpe-051135	Leersia perrieri	47.54	7.00e-152	528.00
IUUC-Loc-051930	Lepisosteus oculatus	48.17	2.00e-170	590.00
IUUC-Lma-053290	Leptosphaeria maculans	40.12	2.00e-123	434.00
IUUC-Laf-053903	Loxodonta africana	43.65	7.00e-127	446.00
IUUC-Mcc-055471	Macaca mulatta	48.41	1.00e-157	548.00
IUUC-Meu-056190	Macropus eugenii	47.61	7.00e-151	525.00
IUUC-Mor-057135	Magnaporthe oryzae	41.19	7.00e-125	439.00
IUUC-Mpo-057475	Magnaporthe poae	41.17	1.00e-121	428.00
IUUC-Mtr-058689	Medicago truncatula	44.41	4.00e-152	530.00
IUUC-Mla-059149	Melampsora laricipopulina	41.51	2.00e-147	514.00
IUUC-Mga-059645	Meleagris gallopavo	42.21	1.00e-51	194.00
IUUC-Mvi-060485	Microbotryum violaceum	41.63	1.00e-125	443.00
IUUC-Mmr-061674	Microcebus murinus	46.82	2.00e-148	517.00
IUUC-Mdo-062973	Monodelphis domestica	47.05	3.00e-156	543.00
IUUC-Mmu-064180	Mus musculus	46.89	4.00e-151	526.00
IUUC-Mac-064535	Musa acuminata	44.80	2.00e-106	378.00
IUUC-Mpu-066406	Mustela putorius furo	48.81	3.00e-153	533.00
IUUC-Mlu-067795	Myotis lucifugus	47.52	1.00e-142	498.00
IUUC-Nfi-068516	Neosartorya fischeri	41.69	1.00e-112	399.00
IUUC-Ncr-068767	Neurospora crassa	42.97	2.00e-119	421.00
IUUC-Opr-071084	Ochotona princeps	52.52	2.00e-62	231.00
IUUC-Ont-071614	Oreochromis niloticus	46.51	1.00e-161	561.00
IUUC-Oba-075980	Oryza barthii	47.38	2.00e-153	534.00
IUUC-Obr-076799	Oryza brachyantha	48.88	9.00e-166	575.00
IUUC-Ogl-077134	Oryza glaberrima	48.72	2.00e-162	563.00
IUUC-Ogu-078655	Oryza glumaepatula	46.49	2.00e-154	537.00
IUUC-Oin-079654	Oryza indica	48.72	4.00e-162	563.00
IUUC-Olo-080706	Oryza longistaminata	52.48	8.00e-98	349.00
IUUC-Ome-081716	Oryza meridionalis	51.90	5.00e-97	347.00
IUUC-Oni-082508	Oryza nivara	46.25	4.00e-150	523.00
IUUC-Opu-083707	Oryza punctata	52.48	1.00e-97	348.00
IUUC-Oru-084453	Oryza rufipogon	52.48	8.00e-98	349.00
IUUC-Osa-085811	Oryza sativa	48.56	5.00e-162	562.00
IUUC-Ola-087361	Oryzias latipes	47.72	2.00e-167	580.00
IUUC-Oga-088015	Otolemur garnettii	47.45	3.00e-156	543.00
IUUC-Oar-090058	Ovis aries	57.49	5.00e-52	197.00
IUUC-Ptr-090631	Pan troglodytes	46.74	2.00e-61	228.00
IUUC-Pan-092306	Papio anubis	48.65	4.00e-157	546.00
IUUC-Pma-094622	Petromyzon marinus	47.85	2.00e-166	577.00
IUUC-Pno-094794	Phaeosphaeria nodorum	38.59	2.00e-116	411.00
IUUC-Ppa-095528	Physcomitrella patens	46.77	6.00e-111	392.00
IUUC-Pfo-096682	Poecilia formosa	46.86	4.00e-167	580.00
IUUC-Pab-097939	Pongo abelii	48.18	8.00e-142	495.00
IUUC-Pop-099043	Populus trichocarpa	49.22	9.00e-152	528.00
IUUC-Pca-100333	Procavia capensis	47.78	6.00e-152	529.00
IUUC-Ppe-102078	Prunus persica	46.33	5.00e-156	542.00
IUUC-Pgr-103525	Puccinia graminis	40.74	1.00e-135	475.00
IUUC-Ptt-103929	Puccinia triticina	41.17	6.00e-133	466.00
IUUC-Pte-104029	Pyrenophora teres	42.20	7.00e-135	472.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	42.05	1.00e-134	472.00
IUUC-Rno-105248	Rattus norvegicus	47.20	1.00e-151	528.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.02	1.00e-133	468.00
IUUC-Sha-106519	Sarcophilus harrisii	47.41	7.00e-158	548.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	42.97	7.00e-133	466.00
IUUC-Spo-108071	Schizosaccharomyces pombe	41.25	7.00e-126	442.00
IUUC-Smo-109604	Selaginella moellendorffii	51.00	6.00e-177	612.00
IUUC-Sit-110551	Setaria italica	49.52	5.00e-165	572.00
IUUC-Sly-110970	Solanum lycopersicum	51.96	2.00e-96	344.00
IUUC-Stu-112593	Solanum tuberosum	49.36	6.00e-168	582.00
IUUC-Sar-113123	Sorex araneus	45.59	3.00e-65	239.00
IUUC-Sbi-113945	Sorghum bicolor	48.24	1.00e-167	581.00
IUUC-Sre-115188	Sporisorium reilianum	45.99	8.00e-86	310.00
IUUC-Ssc-115352	Sus scrofa	49.52	8.00e-158	548.00
IUUC-Tru-117685	Takifugu rubripes	47.48	4.00e-167	579.00
IUUC-Tni-119982	Tetraodon nigroviridis	47.78	3.00e-161	560.00
IUUC-Tca-121664	Theobroma cacao	50.63	1.00e-173	601.00
IUUC-Tre-122229	Trichoderma reesei	39.64	1.00e-119	422.00
IUUC-Tvi-122576	Trichoderma virens	41.19	1.00e-120	425.00
IUUC-Tae-125772	Triticum aestivum	49.12	5.00e-159	553.00
IUUC-Tur-126781	Triticum urartu	45.99	2.00e-132	464.00
IUUC-Tme-127080	Tuber melanosporum	44.96	7.00e-151	525.00
IUUC-Ttr-128514	Tursiops truncatus	43.59	1.00e-92	332.00
IUUC-Uma-129556	Ustilago maydis	42.50	1.00e-136	478.00
IUUC-Vda-129715	Verticillium dahliae	41.83	1.00e-126	445.00
IUUC-Vvi-131211	Vitis vinifera	47.80	6.00e-159	552.00
IUUC-Xma-133883	Xiphophorus maculatus	46.70	7.00e-161	559.00
IUUC-Yli-134438	Yarrowia lipolytica	38.52	2.00e-66	245.00
IUUC-Zma-135341	Zea mays	44.15	2.00e-157	547.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence