iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007107

Ensembl Protein ID

AT1G64350.1

UniProt Accession

Q93VR9; Q8LB12; Q9C5X7; Q9C7V9; SEH1_ARATH

Genbank Protein ID

AAG59882.1; AAG51710.1; AEE34229.1; AAK44037.1; AAL15222.1; AAM65032.1

Protein Name

Protein SEH1

Genbank Nucleotide ID

AF325901; AC066689; CP002684; AF370222; AY059116; AY087489

Gene Name

SEH1; SEH1H; At1g64350; F15H21.2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G64350	AT1G64350.1	AT1G64350.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.50e-11	43.0	278	308

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWD 29
           gH+++v+ +++  s+ +l+s + Dg +k+W 
   Q: 278  GHQGEVWQMEWdmSGMTLASTGSDGMVKLWQ 308
           8**********987755777777*******5 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for proper export of mRNAs from the nucleus to the cytoplasm.

Protein Sequence
(Fasta)

MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV 60
KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC KSMKNKSSQV LDVQFGVSRK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATATTTTGG CCCAAGTCTT GATAATTCGA ATTAAACGAA AAAAATCGCT GAAGCTCATC 60
GGAGGCGAAA ATGGCGAAAT CAATGGCGAC GCTAGATTCT GGCACCACAT GTTCCTCCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005635--C:nuclear envelope
GO:0005643--C:nuclear pore
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport

KEGG

ath:AT1G64350

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003124	Amborella trichopoda	68.66	4.00e-82	296.00
IUUC-Apl-003654	Anas platyrhynchos	25.89	5.00e-24	104.00
IUUC-Aca-004378	Anolis carolinensis	26.24	2.00e-24	105.00
IUUC-Aly-005963	Arabidopsis lyrata	95.09	2.00e-172	597.00
IUUC-Bdi-014594	Brachypodium distachyon	58.44	5.00e-110	390.00
IUUC-Bol-016565	Brassica oleracea	86.77	5.00e-161	559.00
IUUC-Bra-017831	Brassica rapa	87.69	2.00e-163	566.00
IUUC-Gma-044300	Glycine max	68.92	9.00e-132	462.00
IUUC-Hvu-047455	Hordeum vulgare	57.19	3.00e-108	384.00
IUUC-Lpe-051064	Leersia perrieri	57.81	4.00e-110	390.00
IUUC-Lma-053000	Leptosphaeria maculans	20.98	2.00e-08	53.50
IUUC-Meu-055958	Macropus eugenii	25.44	7.00e-17	80.90
IUUC-Mtr-057876	Medicago truncatula	64.53	2.00e-124	437.00
IUUC-Mla-058820	Melampsora laricipopulina	24.75	4.00e-13	68.20
IUUC-Mga-059348	Meleagris gallopavo	25.89	3.00e-24	105.00
IUUC-Mac-064960	Musa acuminata	58.95	2.00e-105	374.00
IUUC-Opr-070773	Ochotona princeps	22.62	8.00e-08	50.80
IUUC-Oan-073098	Ornithorhynchus anatinus	25.18	4.00e-24	104.00
IUUC-Oba-075325	Oryza barthii	54.06	2.00e-99	355.00
IUUC-Obr-076089	Oryza brachyantha	56.56	1.00e-106	378.00
IUUC-Ogl-077279	Oryza glaberrima	57.19	2.00e-109	387.00
IUUC-Ogu-078901	Oryza glumaepatula	54.06	1.00e-99	355.00
IUUC-Oin-079385	Oryza indica	54.57	2.00e-107	381.00
IUUC-Ome-081809	Oryza meridionalis	61.48	5.00e-103	367.00
IUUC-Oni-082185	Oryza nivara	52.50	5.00e-95	339.00
IUUC-Opu-083324	Oryza punctata	55.62	1.00e-102	365.00
IUUC-Oru-084801	Oryza rufipogon	57.50	5.00e-110	390.00
IUUC-Osa-085790	Oryza sativa	57.19	2.00e-109	387.00
IUUC-Olu-087855	Ostreococcus lucimarinus	25.55	1.00e-12	66.20
IUUC-Ppa-095228	Physcomitrella patens	43.49	2.00e-69	254.00
IUUC-Pop-099015	Populus trichocarpa	68.42	9.00e-131	459.00
IUUC-Ppe-101303	Prunus persica	68.31	3.00e-130	457.00
IUUC-Rno-104895	Rattus norvegicus	25.93	4.00e-26	114.00
IUUC-Smo-109282	Selaginella moellendorffii	42.59	6.00e-69	253.00
IUUC-Sit-110393	Setaria italica	57.81	2.00e-108	384.00
IUUC-Sly-111125	Solanum lycopersicum	66.87	1.00e-124	438.00
IUUC-Stu-112745	Solanum tuberosum	60.50	3.00e-123	434.00
IUUC-Sbi-114110	Sorghum bicolor	56.88	2.00e-108	385.00
IUUC-Ssc-115589	Sus scrofa	24.73	2.00e-23	102.00
IUUC-Tca-120999	Theobroma cacao	61.60	7.00e-120	424.00
IUUC-Tae-122796	Triticum aestivum	58.49	3.00e-110	390.00
IUUC-Tur-126582	Triticum urartu	59.35	1.00e-99	355.00
IUUC-Tbe-127344	Tupaia belangeri	24.23	2.00e-15	76.30
IUUC-Vvi-131103	Vitis vinifera	69.14	2.00e-133	467.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence