iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017496

Ensembl Protein ID

Bra003569.1-P

UniProt Accession

M4CH86; M4CH86_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra003569	Bra003569.1	Bra003569.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.40e-22	77.4	461	499
UBD/Beta-Prp	2.00e-59	202.2	420	743

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvll 36
           H ++v+++af  ++  l + +++dD+tikvWD  tgv+ 
   Q: 461  HVGGVNDIAFstPNkQLcFTTCGDDKTIKVWDAATGVKR 499
           99********98664444788***********9999875 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           ++ v +spd+sl+ +++ ++ +++++++ g       ++  h ++v+++ fs   k   + t+++D+tikvwd  tg   ht++ghe+ v+s+  +
   Q: 420  VNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDmrqHLEIDAHVGGVNDIAFSTPNKqlCFTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
           455778**********************9998333334589**********9887778999*******************************8655 PP
   S: 104  p..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtltgghtdsvyslsfdsngk 193
              + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++    D+ +  W+ + g + rt +g h++s   ++fd +++
   Q: 516  YkeNIQFIFSTALDGKIKAWLYDNMGSRVDYEAP-GRWCTTMAYSADGTRLFSCGTskdgDSYIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKN 610
           44488***************88887777645554.5599999999999999998754545778888999*************************** PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn.....................s 265
           + +++++d ++k+wd+ + + + +  +    +   ++rf +++ +l++ + D+ i++  +++   ll+t+ +                        
   Q: 611  RYLAAGDDFSIKFWDMDNVQLLTAIDADGglQASPRIRFNKEGSLLAVSANDNMIKVMaNTDGLRLLHTVDNLSsesskpainniavaeraaerpA 706
           *****************99887777665533555569999*****************876666666666665554556666666668888888777 PP
   S: 266  svisvavlsfgdnvl......vlgsedskvniwklkk 296
           sv+s+ +++ + +++      ++ ++++k +iwkl++
   Q: 707  SVVSIPGMNGDSRNMvdvkpvITEESNDKSKIWKLTE 743
           7777777666655556777767777789999999975 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHSGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVEILVKD LRVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCTC TTAGTAGAGA GCTCGTGTTC TTGATCTTAC AGTTTCTAGA TGAAGAGAAG 60
TTCAAAGAGA CTGTTCATAA GTAAGTTTTA TTTTTTTATT TGGGGATTGT GAAGAATCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027295--Quinoprotein_ADH-like_fam
IPR011047--Quinoprotein_ADH-like_supfam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0010072--P:primary shoot apical meristem specification
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005472	Arabidopsis lyrata	96.33	0.00e+00	2095.00
IUUC-Ath-007640	Arabidopsis thaliana	96.05	0.00e+00	2083.00
IUUC-Bol-016225	Brassica oleracea	99.54	0.00e+00	2199.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence