iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099565

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_554825; POPTR_0003s17510g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s17510	POPTR_0003s17510.1	POPTR_0003s17510.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.30e-06	29.9	694	735

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cle +   ++  + lpC H fh+dC+  w       s++ +CP+C+
   Q: 694  CAVCLEAPtigEK-IRHLPCLHKFHKDCIDPW------LSRKTSCPICK 735
           ******8877555.999***************......99999*****6 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEDMNSDQVF EIPDTPERAA ARSINGAQFR KESISSVPGC LRKSGFVDEK SFNPPRTSRG 60
RIFSENGLNG RLHLHPQKSP INVDEYDSPS NSALDSHPHQ NAPLFRRPAI VNNSRPENRH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATTGAAGGA TCAGTTAAGC GCATGGAAAT TATTTTGTTG GTGTAATTTT CGATTCTTAG 60
TTTTTTAATA GCATCATCAG GTAATTAATA AATTAATCAA TTGTTTTGAT TGATCGTTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s17510g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000237	Aegilops tauschii	63.01	6.00e-23	102.00
IUUC-Atr-002738	Amborella trichopoda	43.75	9.00e-43	168.00
IUUC-Aly-006291	Arabidopsis lyrata	34.07	3.00e-62	232.00
IUUC-Ath-007110	Arabidopsis thaliana	37.50	2.00e-62	233.00
IUUC-Ang-009734	Aspergillus niger	51.02	4.00e-11	62.00
IUUC-Aor-010134	Aspergillus oryzae	48.98	1.00e-10	60.50
IUUC-Ate-010329	Aspergillus terreus	39.29	3.00e-12	65.90
IUUC-Ame-011435	Astyanax mexicanus	55.32	9.00e-14	70.50
IUUC-Bdi-014954	Brachypodium distachyon	30.82	3.00e-33	135.00
IUUC-Bol-015541	Brassica oleracea	37.15	1.00e-56	213.00
IUUC-Bra-017050	Brassica rapa	36.94	2.00e-55	209.00
IUUC-Cre-022984	Chlamydomonas reinhardtii	39.17	2.00e-19	91.70
IUUC-Gma-043115	Glycine max	49.80	2.00e-52	200.00
IUUC-Hvu-047663	Hordeum vulgare	40.89	2.00e-30	127.00
IUUC-Lpe-051616	Leersia perrieri	32.09	1.00e-28	121.00
IUUC-Loc-052044	Lepisosteus oculatus	50.82	5.00e-14	71.60
IUUC-Mtr-057967	Medicago truncatula	65.62	4.00e-45	175.00
IUUC-Mac-065237	Musa acuminata	45.12	8.00e-58	218.00
IUUC-Ont-072099	Oreochromis niloticus	48.33	1.00e-14	72.40
IUUC-Oba-075723	Oryza barthii	37.10	2.00e-29	124.00
IUUC-Obr-076746	Oryza brachyantha	37.63	3.00e-28	119.00
IUUC-Ogl-076935	Oryza glaberrima	37.10	2.00e-29	124.00
IUUC-Ogu-077982	Oryza glumaepatula	37.10	9.00e-30	124.00
IUUC-Oin-079124	Oryza indica	37.10	8.00e-30	125.00
IUUC-Ome-081694	Oryza meridionalis	33.09	7.00e-31	128.00
IUUC-Oni-082353	Oryza nivara	37.10	1.00e-29	124.00
IUUC-Opu-083242	Oryza punctata	37.67	7.00e-33	135.00
IUUC-Oru-085078	Oryza rufipogon	37.10	9.00e-30	124.00
IUUC-Osa-086131	Oryza sativa	37.10	8.00e-30	125.00
IUUC-Ppa-095697	Physcomitrella patens	36.74	2.00e-33	137.00
IUUC-Ppe-101581	Prunus persica	42.52	5.00e-146	511.00
IUUC-Smo-109212	Selaginella moellendorffii	48.20	4.00e-31	128.00
IUUC-Sit-110544	Setaria italica	36.56	5.00e-34	138.00
IUUC-Sly-110985	Solanum lycopersicum	40.93	1.00e-80	293.00
IUUC-Stu-112544	Solanum tuberosum	35.79	2.00e-88	320.00
IUUC-Tca-121668	Theobroma cacao	44.03	4.00e-142	498.00
IUUC-Tae-124005	Triticum aestivum	40.54	8.00e-31	128.00
IUUC-Tur-126613	Triticum urartu	63.01	7.00e-23	102.00
IUUC-Vvi-131471	Vitis vinifera	60.61	8.00e-54	202.00
IUUC-Zma-134996	Zea mays	31.07	6.00e-22	98.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence